PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g628160.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 426aa MW: 45694 Da PI: 6.0389 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.5e-16 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk++G g+W+++ + g+ R++k+c++rw ++l Pd.00g628160.m01 34 KGPWTAAEDGILMEYVKKHGEGNWNAVQKNSGLARCGKSCRLRWANHL 81 79******************************************9986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 426 aa Download sequence |
MMLNSSGVDG VHEAEAAAQR GGSHHNHQQR GLKKGPWTAA EDGILMEYVK KHGEGNWNAV 60 QKNSGLARCG KSCRLRWANH LRPNLKKGSL SPDEERLIIE LHAKFGNKWA RMASQPRKSS 120 TYSPAQLSLY DHITTFSSSS DHHNNHTNNY HRNAASLFSN TITQFNGNGG GFAMPFGSSS 180 SSALFNQSHN IPNPNPFGSS SATPPPLHHQ YNSHGGFGGY NNLSLSSIIM GPPSYDSTAG 240 LVAGSNAELP SNQTPPSIQC DEAPMGASGN TNEDDRYEIA PVPSQGNSGL LDDVLAEAHN 300 ISNKRLKMQI ESTLKNSGDN SAENQRDDSS SPSSIDMKQS EDPLDEMDDD LLSLLNFSST 360 VPAVSETSWY LAECMSNSGS SASENVGLDT QQNAPLTLTS VKTTAAAPEV QSTLGACYWN 420 NMPGIC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G32460.1 | 4e-50 | MYB family protein |