PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g620120.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 344aa MW: 39074.2 Da PI: 9.1379

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g620120.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.5e-18	51	104	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Pd.00g620120.m01 51 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 104 456899***********************************************9 PP
2	HD-ZIP_I/II	129.3	1.5e-41	50	140	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+++a+k++n++L++++++L++e+ Pd.00g620120.m01 50 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEAIKADNDALQAQNQKLQAEI 140 69**************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MRHEEEGWAL GQRSVASFLG KRSVSFSGIE LGEEAHGEDD LSDDGSQAGE KKRRLNMEQV 60 KTLEKNFELG NKLEPERKMQ LARALGLQPR QIAIWFQNRR ARWKTKQLEK DYDVLKRQFE 120 AIKADNDALQ AQNQKLQAEI LALKSREPAE SINLNKETEG SCSNRSENNS DIKLDISRTP 180 AIDSPQSTHP NPTSRTLFSS SLIRPSSGVA QLFQNTSRPE VIQCQKIDQM VKEESLTNMF 240 CGIDDQSAGF WPWAFFLRYR FTNLRVTVIS GLTGQDRSDF SYKVIKDVQV VPRFIGEWGD 300 IIITLRDGTK VDLRSVPKFR EIAKYCLSLA DKPAVLKEKG SKGF

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MRHEEEGWAL GQRSVASFLG KRSVSFSGIE LGEEAHGEDD LSDDGSQAGE KKRRLNMEQV  60
KTLEKNFELG NKLEPERKMQ LARALGLQPR QIAIWFQNRR ARWKTKQLEK DYDVLKRQFE  120
AIKADNDALQ AQNQKLQAEI LALKSREPAE SINLNKETEG SCSNRSENNS DIKLDISRTP  180
AIDSPQSTHP NPTSRTLFSS SLIRPSSGVA QLFQNTSRPE VIQCQKIDQM VKEESLTNMF  240
CGIDDQSAGF WPWAFFLRYR FTNLRVTVIS GLTGQDRSDF SYKVIKDVQV VPRFIGEWGD  300
IIITLRDGTK VDLRSVPKFR EIAKYCLSLA DKPAVLKEKG SKGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	107	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-99	HD-ZIP family protein