PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g610930.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 819aa    MW: 91470.3 Da    PI: 7.8242
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g610930.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.2e-07382403426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++C f++  G+C+ GdrC+F H+
  Pd.00g610930.m01 382 VPCYFYFN-GFCNKGDRCSFLHD 403
                       68******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    
MTAFFQRLAK AAPIAFNNSF GGQSKSSFRI PFGALAAVSG GISYLCYYSS PDLVYLDEIK  60
EQAGPKVALN PNKWIEFKLQ DTARVSHNTQ LFRFTFDPTA KLGLDVASCL ITRAPIEQDA  120
EGKPKYVIRP YTPISDPDSK GYFDLLIKVY PEGKMSQHFA SLKPGDVVEV KGPIEKFRYT  180
PNMKKHIGMI AGGSGITPML QVIEAIMKNP DDTTQVSLLY ANVSPDDILL KQKLDILAAS  240
HPNLKVYYTV DNPTKSWKGG KGYISKDMAV KGLPGPAEDT LILVCGPPGL MKHISGDKAK  300
DWSQGELTGI LKELGYTEEM GVDCEFRHSK IARLNPKDCW YWLSGNCLNP TCAFRHPPLD  360
GHGGAPSSES APSSVSANKT IVPCYFYFNG FCNKGDRCSF LHDTEGGAST EKSPKTASAC  420
NETFALSSEN KASAGNDMMR APRMAHLNPS ETASMETVDT GFQPKEDLNY FDQSAQTDVP  480
QQSVSPQISV SGDEEATVDQ SSDDQADDLV QEEWWESSPG FDVLVDGKSE NLGCEDDPEC  540
FLTLDGERRE LNSHFLGYDF ENPDDYVPVC PPDAELLYER DVYDSYDFLD NKHMLGNEGK  600
FPGYAKETMS DAMYSRKRKL IPMELAVYDQ DFLDVRDRLR RRRMTDCHSI TGLSRRHEAL  660
RLFGRSREMP RRHGMGWRVH GRLASEVRNS TYGSLRENGA SSSAGIQRVS LRHSQQFRPR  720
KHHKERKLAK QKLPSSGVSK KRVPREKRSA QKSTTFTGPK TLAQIKEEKK KAEENRDHIG  780
IMRHVRRTRV DFQGPKPLNE ILKEKGKIAD KREGNAGSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1637643DRLRRRR