PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g608980.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

RAV

Protein Properties

Length: 348aa MW: 39322.4 Da PI: 8.2088

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g608980.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	27.9	5.7e-09	38	86	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++kGV + +g W A+I+ + r++lg+f ++ +Aa ++ a++kl+g Pd.00g608980.m01 38 KKFKGVVEQP-NGHWGAQIYA------NhERVWLGTFNSEIDAAMGYDSAALKLRG 86 589*8666.8**999......44******99***********98 PP
2	B3	79.3	4e-25	167	258	1	83
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+ltpsdv+k++rlv+p k+a ++ g+++ +s +lt++d+ rsW+++++++k+s+++v+tkGW++Fv+ ++L+++D++ F Pd.00g608980.m01 167 FQKELTPSDVGKLNRLVIPSKYACTYfptvseairGKVESCSSQLTFYDRMMRSWTFRFCFWKSSKSFVFTKGWSRFVRTHDLQAKDTIRFL 258 99*******************999*****9999************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MSSTVSNSGM KMNTVGGVSD SSLAANDSTD GACKRVSKKF KGVVEQPNGH WGAQIYANHE 60 RVWLGTFNSE IDAAMGYDSA ALKLRGRDCH RNFPWTETTF EEQHFQNQHA TEVVLIMIKD 120 GSYQTKFSEF RRSRSGIESV GADVQFGGLA RVQSSNGKGE LLEDFLFQKE LTPSDVGKLN 180 RLVIPSKYAC TYFPTVSEAI RGKVESCSSQ LTFYDRMMRS WTFRFCFWKS SKSFVFTKGW 240 SRFVRTHDLQ AKDTIRFLQC RYKQSGDGNY KEQPHSFCMI QVKKDGGRSM MNDGGMMDLD 300 YKFKVEAVSP NIHEDEDGIL LADQKKCFRL FGVEISDVDV LSSHSIVV

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MSSTVSNSGM KMNTVGGVSD SSLAANDSTD GACKRVSKKF KGVVEQPNGH WGAQIYANHE  60
RVWLGTFNSE IDAAMGYDSA ALKLRGRDCH RNFPWTETTF EEQHFQNQHA TEVVLIMIKD  120
GSYQTKFSEF RRSRSGIESV GADVQFGGLA RVQSSNGKGE LLEDFLFQKE LTPSDVGKLN  180
RLVIPSKYAC TYFPTVSEAI RGKVESCSSQ LTFYDRMMRS WTFRFCFWKS SKSFVFTKGW  240
SRFVRTHDLQ AKDTIRFLQC RYKQSGDGNY KEQPHSFCMI QVKKDGGRSM MNDGGMMDLD  300
YKFKVEAVSP NIHEDEDGIL LADQKKCFRL FGVEISDVDV LSSHSIVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	2e-82	RAV family protein