PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g592210.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 209aa MW: 24467.4 Da PI: 9.3469 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.6 | 2.8e-12 | 43 | 91 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50 i+ + nr vtf kR++ ++ K E+ +LC++ ++ +++ s+ k+ ++ Pd.00g592210.m01 43 ISHEPNRRVTFKKRKANLFRKLTEITTLCGIIACAVVYDpSDSKMDAWP 91 88899*************************9998777751567888887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence |
MVDFLQHWII SLYILLERKF RKHPRYFFVF STMGKNKIKH ELISHEPNRR VTFKKRKANL 60 FRKLTEITTL CGIIACAVVY DPSDSKMDAW PSPQEAFYVL ENFKKLPEQR RGQFMMDQKA 120 FLKKNISRLN GQLERARFKN QALDAELLLI EYLEGKNLSD SSRLGSLLAL EDQLAKKISF 180 ITSRIEFMEV LEPNEVDAEI NSDEMGDQG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 57 | RKFRKHPRYFFVFSTMGKNKIKHELISHEPNRRVTFKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22590.2 | 4e-28 | M-type_MADS family protein |