PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g587600.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 529aa MW: 57140.9 Da PI: 6.872

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g587600.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.2	1.1e-18	149	235	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a++++ ++l+rg+l++ +Weev++ + r ++s qCk+k +nl+kryk ++++++++ s s++p+f+++e Pd.00g587600.m01 149 EWSDSAISCLLDAYTDKFTQLNRGNLRGRDWEEVAATVseRCDRQRKSVDQCKNKVDNLKKRYKLERQRMNNG-GVSASHWPWFKKME 235 5***********************************544456677******************9998.566679*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MASCDDDFSI LGDESNTTHH SHLPHAPASH QLHQPYAPPH RFATRTTPVH APPAQPILSD 60 KVNAGEDQAE AGDDYDDASA AAFCSNPFES GTDQNDVVAG ASEKRKDHSD ELSDGGGGGG 120 GSGSAPYSYK RSKPSSAAAI GEYRKDREEW SDSAISCLLD AYTDKFTQLN RGNLRGRDWE 180 EVAATVSERC DRQRKSVDQC KNKVDNLKKR YKLERQRMNN GGVSASHWPW FKKMENIVGN 240 SLPGKAVSDE DKVVSSPGTT PRQSKSRNAM AIISPVSQMN KVKSAPSIKW RRVVFKISGA 300 ALAGAAPNNV DSKLAMLIAR EVALACHNGV EVAIVVGGRN FFCGDAWVTA TGLDRSTAYQ 360 IGMMATVMNS VLLQSALEKM GVQTRVQTAF SMQEIAEPYS RQRAIRHLEK GRVVIFAGIG 420 AGTGNPLFST DTAAALRALE IHAEAVLKGT NVDGVYDCNS QDNNFTFEHI SFRDVVTRGA 480 TSMDSMALTF CEENRIPVVV FNLLEPGNIS KALCGEQVGT LIDQAGRIS

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MASCDDDFSI LGDESNTTHH SHLPHAPASH QLHQPYAPPH RFATRTTPVH APPAQPILSD  60
KVNAGEDQAE AGDDYDDASA AAFCSNPFES GTDQNDVVAG ASEKRKDHSD ELSDGGGGGG  120
GSGSAPYSYK RSKPSSAAAI GEYRKDREEW SDSAISCLLD AYTDKFTQLN RGNLRGRDWE  180
EVAATVSERC DRQRKSVDQC KNKVDNLKKR YKLERQRMNN GGVSASHWPW FKKMENIVGN  240
SLPGKAVSDE DKVVSSPGTT PRQSKSRNAM AIISPVSQMN KVKSAPSIKW RRVVFKISGA  300
ALAGAAPNNV DSKLAMLIAR EVALACHNGV EVAIVVGGRN FFCGDAWVTA TGLDRSTAYQ  360
IGMMATVMNS VLLQSALEKM GVQTRVQTAF SMQEIAEPYS RQRAIRHLEK GRVVIFAGIG  420
AGTGNPLFST DTAAALRALE IHAEAVLKGT NVDGVYDCNS QDNNFTFEHI SFRDVVTRGA  480
TSMDSMALTF CEENRIPVVV FNLLEPGNIS KALCGEQVGT LIDQAGRIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein