PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g583030.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 222aa MW: 25211.1 Da PI: 5.2317 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.6 | 1.3e-35 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca+Ck +rrkC + C +apyfpa++ ++f+n+hk+FG+sn++k+++ + +++r++a++s++ e++ar +dPv+G++g+i+ l+ q++ l+ e Pd.00g583030.m01 13 PCASCKQQRRKCDETCEMAPYFPASRYSEFQNAHKIFGVSNIHKIMAMAAPDQRQAAAESILTEGNARKNDPVNGCLGIIRGLNAQIQGLERE 105 7******************************************************************************************** PP DUF260 94 lallkee 100 l+ +k++ Pd.00g583030.m01 106 LHIMKQH 112 **99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MENRDQGAAQ NHPCASCKQQ RRKCDETCEM APYFPASRYS EFQNAHKIFG VSNIHKIMAM 60 AAPDQRQAAA ESILTEGNAR KNDPVNGCLG IIRGLNAQIQ GLERELHIMK QHLELCKEKE 120 ELDGKKNQSK EEDLQHDQSD GLNSPIHPDL PSHVMVEMRK YEQGYNYWST LEDAEEKVFD 180 IQLIEPVLFK SNLKGNASSS APGESRDGKE KEEGEIARWE ER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-29 | LBD family protein |