PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g573510.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 545aa MW: 59757.8 Da PI: 6.6572 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.7 | 1.6e-11 | 303 | 345 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L Pd.00g573510.m01 303 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 345 79*********************66......****************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence |
MLEGDWYMNN VLNPTHHQDL HSLPNHRQPD IRDIACFSEN TLMLQPMDSS ASCSPSQAFS 60 LDPSPPQHLF PPKSCFSSLL NVVSTNPFDN GFDLGCDSGF LSSFQGNQPS NSSAFLGFTA 120 LNSQSQMGTP ELSSSAEFPT TRLLPAPNND TELDGDFSLT SFQGFDGSGG AQLLNRAKPQ 180 RPLHVFPPVG AHPTLFQKRA ALRQNSGCEG TDKLGNLEIS GPRYGGVLES LERKRKKNVE 240 GEMEEGSMDV SGLNYDSDEF NEYSQVEENV KNAGSNSNAN STVTGVDGDR KGKKKGLPAK 300 NLMAERRRRK KLNDRLYMLR SVVPKISKMD RASILGDAID YLKELLQRIN DLHNELESAP 360 PGSLLPPSSC FQPLTPTPPT LPCRVKEELC PSSFPSPKGQ SAKVEVRVRE GRTVNIHMFC 420 ARRPGLLLSA MRALDNLGLD IQQAVISCFN GFALDVFRAE QCRESQFLPE QIKAVLLDSA 480 GFHEMILCCP LCLSVDGKGR KGSSSPACIP FAFRLKIELL LAQVGDLKNR FCVVLGSPII 540 SDWSF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 233 | 237 | RKRKK |
2 | 293 | 311 | KKKGLPAKNLMAERRRRKK |
3 | 305 | 312 | ERRRRKKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26744.1 | 1e-140 | bHLH family protein |