PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g556780.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 430aa MW: 47567.1 Da PI: 6.1253 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.6 | 2.3e-13 | 167 | 213 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++Ka++L A++YIk+Lq Pd.00g556780.m01 167 DHIIAERKRREKLSQRFIALSAMVPGL-----KKMDKASVLGDAIKYIKQLQ 213 699************************.....9******************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 430 aa Download sequence |
MAISSIGGMS ELGMEDPYFI NQWHMNSLDE VSMLPLAAAF GENFNQSHFH PNFNLKTSMD 60 SSHSGIDRPM KQLKTDGWSS CKTDQHGSNP QVASSPNILS FVNSNSINQM GVLKPKEEAA 120 VCSNSNNSLP SDILLSQSSF GNQSYLFKAS QGTKGVNTNT RLSTTQDHII AERKRREKLS 180 QRFIALSAMV PGLKKMDKAS VLGDAIKYIK QLQDKVKTLE EQTRKKNMES VVFVKKTQLF 240 ANDDNSSSEE NNSSGPFDET LPEIEARFCD NNVMIRIHCE KRKGVVEKTI AEVEKLQLKF 300 INSSVLTFGG CALDVTIIAQ MEVEFSLSVK ELVKNLRSAF DMFMYSYASS AGFGDCVDGG 360 GFPEWRTKPE TVRMHFEVLA KVDGDKIVPE RVVPINPVVL EDTVAPNELL GNVSMSTVPI 420 VYPPANPLTL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 172 | 177 | ERKRRE |
2 | 173 | 178 | RKRREK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37850.1 | 4e-64 | bHLH family protein |