PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g555060.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 428aa MW: 47757.6 Da PI: 6.1562

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g555060.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.4	2.2e-12	253	298	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L Pd.00g555060.m01 253 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 298 799*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MEELIISPSS SSSLVSLPQE TSPSLQQRLQ FIVQSQPDWW SYAIFWQPSN DHQDNGRLFL 60 TWGDGHFQGS KDPSAKHHNN PYGILSERRK ILKGIQSLIH DNNPDHHQDS IMDHMGLDAD 120 VSDGEWFYVM SLARSFSIGE SAISASVPGK AFSSGSVVWL TGAHELQFYN CDRAKEAQMH 180 GFQTLVCIPT PTGVLEMGSS DSIRENWSLV QQAKSLFGSD LICSPDYSDS DGPKRTPKKR 240 GRKPGLGRDT PLNHVEAERQ RREKLNHRFY ALRAVVPNVS RMDKASLLSD AVSYINELKT 300 KVDELESQVQ RESKKVKVET GDNLDIQSTT TSVEQIAKPP SSSANGSGFE VEVKIVGTDA 360 MIRVQSENVN YPSARLMAAL RDLELQIHHA SLSCINELML QDIVVKVPEN MRSEDSLKSA 420 LLRILDQN

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MEELIISPSS SSSLVSLPQE TSPSLQQRLQ FIVQSQPDWW SYAIFWQPSN DHQDNGRLFL  60
TWGDGHFQGS KDPSAKHHNN PYGILSERRK ILKGIQSLIH DNNPDHHQDS IMDHMGLDAD  120
VSDGEWFYVM SLARSFSIGE SAISASVPGK AFSSGSVVWL TGAHELQFYN CDRAKEAQMH  180
GFQTLVCIPT PTGVLEMGSS DSIRENWSLV QQAKSLFGSD LICSPDYSDS DGPKRTPKKR  240
GRKPGLGRDT PLNHVEAERQ RREKLNHRFY ALRAVVPNVS RMDKASLLSD AVSYINELKT  300
KVDELESQVQ RESKKVKVET GDNLDIQSTT TSVEQIAKPP SSSANGSGFE VEVKIVGTDA  360
MIRVQSENVN YPSARLMAAL RDLELQIHHA SLSCINELML QDIVVKVPEN MRSEDSLKSA  420
LLRILDQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	1e-91	bHLH family protein