PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g550780.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 918aa MW: 101940 Da PI: 6.9879

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g550780.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.2	5.5e-15	614	673	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n+ k+ ++++lg ++++e Aa ++ a++k++g Pd.00g550780.m01 614 SIYRGVTRHRWTGRFEAHLWDkSSWNNiqnKKgRQVYLGAYDSEEAAAHTYDLAALKYWG 673 57*****************777799977447***********************98 PP
2	AP2	51.3	3e-16	716	768	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a+++a+ +++g+ Pd.00g550780.m01 716 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYNTQEEAAAAYDRAAIEYRGA 768 89**99******99966...3.6***********************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence
MAVSAFKSSS KRSNAATNSS ASTTSSVGRQ QITDKDNNNP AKKAPLRRSR SVSAFSRTSL 60 DVSAESFLNK RDNPLFWSTD AQAVDPQKLV KPTKLDAATS KDSRPATSAG ADSRRGRSGL 120 RNSDALGTRK EAGRSLSRVD PSSRNRSISR GPDSRRHFVN SKSDDEQVWG SLNKVGSDGK 180 KGALVRSSSD ELDELKGLRT WSSQHSQDSD ANLSCLQSTN WEDGVSVAGS LSGAEEKAVK 240 AVCERMNMDL GHSHLSVQGK HLEDDNQSTS IYETVRSEVR RAISEIQNDL ESAMRRSNTP 300 ALATTDIADI PPDLVNPSAV ELVLDIRREY AKKLEQSRER SRKLQSDLAV EEHRGQELSR 360 ILKEVLPDPK TSNVPKSRPG RKASIERRKM SKRLTEEAMS YFDECVSLST FDSSDFSSPE 420 DPPLNLVGFT TPVGKITSLL QASSTAAVTN KSNSCHNDKQ GLSMENQYTD DRHASGLMAS 480 SGPREPLISP NSANMPQDWK FSFAHKPTET LELQPDIMKY ARHFEKGIEK DDTELQTNVY 540 GNLGDMFISF GSSIMSSSWN MDGVSIIHGP ETPHLNQAEN QKPKAKRIRK NQNNPTEKCQ 600 NGTNPNTGGG RRSSIYRGVT RHRWTGRFEA HLWDKSSWNN IQNKKGRQVY LGAYDSEEAA 660 AHTYDLAALK YWGPGTTLNF PIETYTKELE EMQKASREEY LASLRRRSSG FSRGVSKYRG 720 VARHHHNGRW EARIGRVFGN KYLYLGTYNT QEEAAAAYDR AAIEYRGANA VTNFDINNYI 780 DKFKKESEET PPKCFDAGLP EDEKYPHLLH CIESNTMDQV MDAADEHKFT WNFLDTGLMA 840 QLPVPDIPLD NKPLELPDFF EDLRFEENFD LIFGAAGDAD LGGLMESAGC GVEEGVPRNL 900 EDNRSSSSPS STTTSVSF

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence

MAVSAFKSSS KRSNAATNSS ASTTSSVGRQ QITDKDNNNP AKKAPLRRSR SVSAFSRTSL  60
DVSAESFLNK RDNPLFWSTD AQAVDPQKLV KPTKLDAATS KDSRPATSAG ADSRRGRSGL  120
RNSDALGTRK EAGRSLSRVD PSSRNRSISR GPDSRRHFVN SKSDDEQVWG SLNKVGSDGK  180
KGALVRSSSD ELDELKGLRT WSSQHSQDSD ANLSCLQSTN WEDGVSVAGS LSGAEEKAVK  240
AVCERMNMDL GHSHLSVQGK HLEDDNQSTS IYETVRSEVR RAISEIQNDL ESAMRRSNTP  300
ALATTDIADI PPDLVNPSAV ELVLDIRREY AKKLEQSRER SRKLQSDLAV EEHRGQELSR  360
ILKEVLPDPK TSNVPKSRPG RKASIERRKM SKRLTEEAMS YFDECVSLST FDSSDFSSPE  420
DPPLNLVGFT TPVGKITSLL QASSTAAVTN KSNSCHNDKQ GLSMENQYTD DRHASGLMAS  480
SGPREPLISP NSANMPQDWK FSFAHKPTET LELQPDIMKY ARHFEKGIEK DDTELQTNVY  540
GNLGDMFISF GSSIMSSSWN MDGVSIIHGP ETPHLNQAEN QKPKAKRIRK NQNNPTEKCQ  600
NGTNPNTGGG RRSSIYRGVT RHRWTGRFEA HLWDKSSWNN IQNKKGRQVY LGAYDSEEAA  660
AHTYDLAALK YWGPGTTLNF PIETYTKELE EMQKASREEY LASLRRRSSG FSRGVSKYRG  720
VARHHHNGRW EARIGRVFGN KYLYLGTYNT QEEAAAAYDR AAIEYRGANA VTNFDINNYI  780
DKFKKESEET PPKCFDAGLP EDEKYPHLLH CIESNTMDQV MDAADEHKFT WNFLDTGLMA  840
QLPVPDIPLD NKPLELPDFF EDLRFEENFD LIFGAAGDAD LGGLMESAGC GVEEGVPRNL  900
EDNRSSSSPS STTTSVSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-89	AP2 family protein