PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g539730.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 292aa MW: 31532.8 Da PI: 8.134 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.2 | 2.9e-13 | 90 | 133 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+++++ f++L llP++ +K +K++i+ +Av+YIk Lq Pd.00g539730.m01 90 KERERRKKMRNMFANLHALLPQL----PPKADKSTIVDEAVNYIKTLQ 133 6*********************6....39******************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence |
MSGGETGGFS EGFLWENQSW ANLSINSDNS VGAGDEDKNL GNKEETAVMG ISTEGHNQVP 60 PAPGKKRRGG GGVGKNGIIK GSTSPADKGK ERERRKKMRN MFANLHALLP QLPPKADKST 120 IVDEAVNYIK TLQQTLQKLQ KQKLERLQGA TTINFDPSIL TPQNVAFGSR EEFLANHGSA 180 ATINPSNSLL TSHCGPANFQ TWTTPNVVLN ICGDEAQISV CCPKKVGLLS AICFVLEKYK 240 LGVMSAHVSS DCNRSMYMIQ AHARGAPDQF LETFPADEIF KQAAAEIILM LS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 4e-30 | bHLH family protein |