PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g538950.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 32832.5 Da PI: 6.7947 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.5 | 8.8e-20 | 22 | 67 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ede+l ++v+ +G ++W++I++ ++ gR++k+c++rw + Pd.00g538950.m01 22 KGPWSPDEDEKLRQLVQHHGARNWSLISKSVP-GRSGKSCRLRWCNQ 67 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 56.3 | 7.3e-18 | 76 | 118 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde+++ a++++G++ W+tIar ++ gRt++ +k++w++ Pd.00g538950.m01 76 AFTPEEDEIIAGAHAKYGNK-WATIARLLN-GRTDNAIKNHWNST 118 79******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence |
MDQRESAMDS SAQAQRELDR VKGPWSPDED EKLRQLVQHH GARNWSLISK SVPGRSGKSC 60 RLRWCNQLSP EVEHRAFTPE EDEIIAGAHA KYGNKWATIA RLLNGRTDNA IKNHWNSTLK 120 RKFSAISGND DGATIDDNHV RPEKKTAVAA VSFSGLCYSP GSPSGSDVSD SGAPAISSSH 180 VFRPVARTGG VLTRESPPSQ NDSKNEAPEP STLLTLSLPG VDDAPSHELP ILESAARRVE 240 GTASLQPETS NAGNTMSFGT EFLSVMQEMI RTEVRSYMEG MCLHSEGVRN AGVKRIAISK 300 LD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 1e-73 | MYB family protein |