PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g538660.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | HB-PHD | ||||||||
Protein Properties | Length: 1000aa MW: 109624 Da PI: 4.5048 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 40.1 | 6.3e-13 | 835 | 878 | 9 | 52 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + +++L + F++n+yp+++++e LA++lgL +qV+ WF N R Pd.00g538660.m01 835 EAVTQRLCKSFKENHYPDRSMKESLARELGLMAKQVSKWFENAR 878 667899************************************99 PP | |||||||
2 | PHD | 38.2 | 3.2e-13 | 467 | 522 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ +++++lCdg C++ fH+ Cl+++l se++p + wlC+ C++k Pd.00g538660.m01 467 FCAKCGSkdVSLDNDIILCDGaCDRGFHQFCLEPPLLSEDIPPDdeGWLCPGCDCK 522 699***964444********66*******************99999*******985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1000 aa Download sequence |
MADAAQLEIP PECVSSQTAK CQEESTSGQI HEIGSESQCS EKTKENIGCK VVQNELLEIC 60 KASNNPDEQS QSFSENLTEN SHVENLGLPA EDVNKSSQSG AQNVTKNSLT EQLEMPHEDP 120 DVNNQTDKTS CSGQMSLEQT NDSGFGTSSR EPDEEKHPSG SFCVQNELLQ TIMPLPICSG 180 SEQLQPISEN VNMASLNDQA VLPPEDVSKT CQTEKISCSH QITLQQVNEF GSGSVPSEPA 240 KQKDQLDSVP AQNDEVKTSK AISSSIVFEQ PGPSIEAMTE DSPIGHSEPP LEDASKSLSD 300 KEMEPLPEDV TQNSSLQQSE TPSKNALKIS SCLGPKDKKN PKSRKRKYMS RSFVRSDRVL 360 RSRTGEKEKP KDFKLSNNVA TLESSNSIAN VSYEKSLIDA YSGEGWKGSS LEKLKPEKEL 420 QRATSEILRR KLKIRDLFQR LESLCAEGMF PESLFDSEGQ IDSEDIFCAK CGSKDVSLDN 480 DIILCDGACD RGFHQFCLEP PLLSEDIPPD DEGWLCPGCD CKVDCIDLLN DSQGTDLSVT 540 DSWEKVFPEA AAAASAGENQ DNHGLPSDDS DDNDYDPDGP ETDDKVEGEE SSSDESEYAS 600 ASDGLETPKS NDEQYLGLPS EDSEDDDYNP YAPDVHEDVK QESSSSDFTS DSEDLGAALD 660 DNIMSSEDVE GPKSMSLGSS RRGQKKHSLK DELMSLLESG PGQGESAPLS GKRHIERLDY 720 KRLHDEAYGN VPTDSSDDED WNDIAMQRKR KNGTGQVANR SPNGKTSNIK NGVITKDIKP 780 DVDKNENTPR RTPHRKSNVE DTSNLSNKSP KGSTKSGSTS GRAGSSRSTY SRLGEAVTQR 840 LCKSFKENHY PDRSMKESLA RELGLMAKQV SKWFENARHC LKVGVDKSAS ENCAPSPQTN 900 RKQLEQGDAI VGDSDHSGAQ NKELHRTDDP MIGCCSRDVK DSELVTPGSS RSKLSTPNNR 960 KRKRRSDDPD PKTETPTPPA EPETNRKPSR VMTRRRKSVS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 344 | 371 | RKRKYMSRSFVRSDRVLRSRTGEKEKPK |
2 | 960 | 965 | RKRKRR |
3 | 993 | 998 | TRRRKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 6e-88 | HB-PHD family protein |