PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g536820.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 99aa    MW: 11532.5 Da    PI: 9.862
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g536820.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.85.8e-181552138
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavi 38
                      krien+  r vtfskRr g+ KKA+EL +LC+aev v+
  Pd.00g536820.m01 15 KRIENQDDRLVTFSKRRSGLYKKASELATLCGAEVGVV 52
                      79*********************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    
MEGRKTKGRQ KIEMKRIENQ DDRLVTFSKR RSGLYKKASE LATLCGAEVG VVPEPVYYIC  60
GDCGMEIPLK PNDVIQCREC GYRILYKKRT RRIVQYEAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-19M-type_MADS family protein