PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g530510.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 303aa    MW: 33629 Da    PI: 4.3085
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g530510.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.33.5e-1233701350
                      HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      +++R  ++ K A+ELS+LCd+ v+v+ ++ + ++ +++
  Pd.00g530510.m01 33 LARRMSTLKKMASELSILCDVAVCVVAVGADSEIETWP 70
                      56788888888**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MAPPQLKSKK PKKMKPQVLK IDANGGFVLK PALARRMSTL KKMASELSIL CDVAVCVVAV  60
GADSEIETWP ENQQDAKSIL LKHKNLGKLG KKIEKGSFSA RKGTDYSFLD TMLEGLNESG  120
VAMMRDGGTK TRTTSTCSFM EFYENIMGTS VLPDPPDQQQ SMLLVDQVPH HQQEDYCTTN  180
SDGFYLEDLH IAAAAPTLSN IDDYVSWLLD DHNDIGLMED YIQFGDSDLA PLPLESQEQQ  240
MPLLQPAQMD TNNSDHLSWL LGGGDIDLME DYIQICDSDL SSPLDPQQQQ QQPPSLQLPQ  300
TTY