PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g507240.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 1161aa MW: 130509 Da PI: 7.4818 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.7e-05 | 921 | 943 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g507240.m01 921 FVCEICNKGFQRDQNLQLHRRGH 943 89******************988 PP | |||||||
2 | zf-C2H2 | 14.3 | 0.00012 | 997 | 1019 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Pd.00g507240.m01 997 WKCDKCSKKYAVQSDWKAHQKTC 1019 58*******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1161 aa Download sequence |
MESVEDEYVE QVVSPRSCSP VNHFEDPQVL PRIGNEYQAE IPPLIARFDY LKITNKPADS 60 KAQLDLSNYF SLGLPIPWRN CEFKKCNGKL ESGGVEQSRI SLNNENSELK VKHLNPVLED 120 AKNVEEFSNL APTVGRGLVL PLESNMKSWS KLEEDSFLLC LYIFGKNLRL VKRFIGSKEM 180 GDILSFYYGT FYTSDGYRRW SECRKLKSRR CIHGKKIFTG WRQKELVSRL IPHVSKECQD 240 MLMESSRYFL EGKISFEEYI FKLKDTVGIH MLIEAVGVGK GKQDLTGTAL EPIKNNHVIS 300 FRPEVPIGKA CSSLTASEII KFLTGNFRLS KARMNDLFWE AVWPRLLARG WHSEQPKLSL 360 VFLVPGIEKF SRSLVKGNQY FDSVSDVLKN VASNPGILKL DNEPPKGSES EDRKDRWDLP 420 KSQGPNDLSN KQHHHYLLPR SVNGGRDLRK FTIVDTSMLL VAEKPKVREL RSLHVQTAGQ 480 STLYYLSSEN EQDTSKESED YAEETNTSNP EEDMIDRKAF VNSSYCVTSN VNTGMPNTPD 540 PALVAMENHE SQITRLLNHE SQSTSLLNDK CPSKIVKDKF SQKLTSGRLK YLAPIMKQKD 600 LTDCKHGESS CSSGEIISVD RKPIQDESHA LSNLPNACEV MEYQVDPQHF STASSLEKGS 660 PSGSNEGSVT TNCLDREGSP EKSQPWTLID LNLPPVSPDL GTDEPLIKCM MQNNDNSSEN 720 KSSSLSETSK QPEPLKLPEV GESMEQQQPA VKSQRQSTRN RPLTTRAWEA LELDFCRTKR 780 KRKGETLQNM STSRLQRDQG NTSVSSVFDE LQDIGEKRVK SLQQNDNANA VGVPQEQIGM 840 LNCRNWLDWN SRVCLNGDVE EGSFSSGNNT GELEVHQENQ QQNQLQGSGS GGASGAQSNS 900 NDPSAEVIAL SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTTTEIRKR 960 VYICPEPTCV HHNPARALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHQKTCG 1020 TREYKCDCGT IFSRRDSFIT HRAFCDALAE ENNKVNHGLM SSQTQMPLPH DQLISSMAMN 1080 TNSSMGGGSD VLNYDISNKN SLNKSFPDDL VPMQFKSMNM NIMAGGVGGP GMFSSTSESS 1140 SNGCHCKQLY HQLPHDAEKL C |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44160.1 | 4e-85 | C2H2 family protein |