PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g503200.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 451aa MW: 48863.3 Da PI: 6.6322

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g503200.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.6	3.4e-16	282	328	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Pd.00g503200.m01 282 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 328 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MNRCVPDFEM EDDYSIPTSS APNRLRKSSL PDDEIMELLW QNGQVVMQSQ NQRPSPNNKK 60 SSQAPSKYDA YPLVDDPFCA DLLYPDSSTV HQTNTTAAAE LRPNPISAPP RRTELQNFLH 120 FSRTNNNKAR VSEAAPSSSK SVVRESTTVV DSCDTPLVGH SSRALDSGLD GGGGGGGVTA 180 GAATSFATVA TANAATSFPG KEIMTCEMSL TSSPGGSSAS ASASAEPISS QKPRADEDRK 240 RKGREAEDDG EFQSEDVEFE SANGKKKSRG STSTKRSRAA EVHNLSERRR RDRINEKMKA 300 LQELIPRCNK SDKASMLDEA IEYLKSLQLQ VQMMSMGCGM VPMMFPAGSS IPTAAAHLGP 360 RFPVPPFHMQ PIPANDPARV QAANQSDQML NVLAAQNPNQ SRVPNFADPY QQFFNPQQMQ 420 LPLQQNQAMA QPSSKPSSSK GPETQENHQS G

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MNRCVPDFEM EDDYSIPTSS APNRLRKSSL PDDEIMELLW QNGQVVMQSQ NQRPSPNNKK  60
SSQAPSKYDA YPLVDDPFCA DLLYPDSSTV HQTNTTAAAE LRPNPISAPP RRTELQNFLH  120
FSRTNNNKAR VSEAAPSSSK SVVRESTTVV DSCDTPLVGH SSRALDSGLD GGGGGGGVTA  180
GAATSFATVA TANAATSFPG KEIMTCEMSL TSSPGGSSAS ASASAEPISS QKPRADEDRK  240
RKGREAEDDG EFQSEDVEFE SANGKKKSRG STSTKRSRAA EVHNLSERRR RDRINEKMKA  300
LQELIPRCNK SDKASMLDEA IEYLKSLQLQ VQMMSMGCGM VPMMFPAGSS IPTAAAHLGP  360
RFPVPPFHMQ PIPANDPARV QAANQSDQML NVLAAQNPNQ SRVPNFADPY QQFFNPQQMQ  420
LPLQQNQAMA QPSSKPSSSK GPETQENHQS G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	267	RKRKGREAEDDGEFQSEDVEFESANGKKK
2	287	292	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	6e-51	bHLH family protein