PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g501830.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 560aa MW: 61198.9 Da PI: 6.5217

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g501830.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.7e-09	374	421	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Pd.00g501830.m01 374 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 421 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MENEFFLNAG IPPPLHFEQT SSMPAWRSSF STAMDIQATA TADRNCSSEQ SPDRFYNPNW 60 DKSADQNIHF ESALSSMVSS PAASNSNISN ESFVIRELIG KLGNIGSSGE ISPHSQSLLG 120 IQANTYMGRN GNGNASTNTS CYSTPLNSPP KLSLPIMDHH LKKEKLPNMG KPMPLNSSVA 180 EFSADPGFAE RAAKFSCFGS RSFNGRTTQL GMNNNNSSSN NNTELPYRSN AIMGNGKLPR 240 VSSSPALKAL GSQTGLQEKM NSLLQDRNEL PISREESTLS EQNPNGETGL AASNSMDLNS 300 RKRKSGAELN DNSNAKRSKP NENNGNDQNG SVKAEDTKGS TSSDEKQTRT GPKPPEPPKD 360 YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQDLVPGC NKVTGKALML DEIINYVQSL 420 QRQVEFLSMK LASVNTRLDF NVDALMSKEI FQQNNSLPQH PIFPLDSSAQ AIYGHQRQQN 480 PALQNNISNG AVDPLDTSLC QSLGMQLPPL SGFNSEGIPQ FPAFGEDDLQ TIVQMGYGQN 540 PNRETELDGS NQVSHMKIEL

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MENEFFLNAG IPPPLHFEQT SSMPAWRSSF STAMDIQATA TADRNCSSEQ SPDRFYNPNW  60
DKSADQNIHF ESALSSMVSS PAASNSNISN ESFVIRELIG KLGNIGSSGE ISPHSQSLLG  120
IQANTYMGRN GNGNASTNTS CYSTPLNSPP KLSLPIMDHH LKKEKLPNMG KPMPLNSSVA  180
EFSADPGFAE RAAKFSCFGS RSFNGRTTQL GMNNNNSSSN NNTELPYRSN AIMGNGKLPR  240
VSSSPALKAL GSQTGLQEKM NSLLQDRNEL PISREESTLS EQNPNGETGL AASNSMDLNS  300
RKRKSGAELN DNSNAKRSKP NENNGNDQNG SVKAEDTKGS TSSDEKQTRT GPKPPEPPKD  360
YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQDLVPGC NKVTGKALML DEIINYVQSL  420
QRQVEFLSMK LASVNTRLDF NVDALMSKEI FQQNNSLPQH PIFPLDSSAQ AIYGHQRQQN  480
PALQNNISNG AVDPLDTSLC QSLGMQLPPL SGFNSEGIPQ FPAFGEDDLQ TIVQMGYGQN  540
PNRETELDGS NQVSHMKIEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	300	305	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-117	bHLH family protein