PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g498600.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 976aa MW: 108716 Da PI: 4.331

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g498600.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.8	3.4e-12	351	392	8	54
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR+++N+++ +Lr+l+P+ + K++Ka+iL A++Y+k+L Pd.00g498600.m01 351 AERKRRKKLNERLYRLRSLVPNiS------KMDKAAILGDAIDYVKDL 392 7*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence
MQNLTERLRP LVGLKDWDYC VIWKLSENQR FIELMDCCCS GADENTQTNG GQELLFPVYP 60 VLPCRDTMQH SRTNSCDVLA HLPSSLSLDS GIYAHPLISN QPIWLNSSSN RDSSAMAERD 120 GTRVLVPSAG GLIELFVSKD VSEDQQVIDY ITAQCNISKE QDTLLGAGCN TSFPVNINDM 180 STEIQPYVFP GNENEGNDHL NSNHFQQPPV VSSSVDHDSN VPYDISVDRI RLCSASPMNF 240 LQHVTYNSEN SMKNGNSNVY YEQRSNESLG GMGLQADADA SNMHNSMHVM EALENMEQQG 300 VEDQDSVKHE AQGGRTADNS GSDCSDQIDD EDDTKYRRRT GKGPQSKNLF AERKRRKKLN 360 ERLYRLRSLV PNISKMDKAA ILGDAIDYVK DLLRQVKELQ DELEQHSNDE GPNTKTSANI 420 CGNHNNFQPE ILNQNGTSIT NEPENDDKPP NGFHPQVGVT QLDGNELFVT VFCEHKPGGF 480 VRLMEALDTL GLEVTNANVT SFRSLVSNVL KVEKKDSEVV QADDVRDSLL EITRNPSSKV 540 WPEMAKAKAF IEWMDCCCSG TEITQYDAGQ DLLFPPVLPC RDAMLQHPRT TACDLLAKMP 600 SSLPLDSGFV PIYMETDGTK VLIPIPGGLI ELLVTKQVFE DQHVIDFITA QYSISLEQDT 660 LDNITGTSIM SEIESKNLLD NGNDQMDINN VLFQATLSSR ICSKLDNLNP PYDVSMGTIS 720 NSPIKFLQQF TNYNSGNRTK NSIDVSYGDA SHEPFLSDKQ MDPFICSAEN GFQEMEAMQR 780 SMMADETQQH MHMQYMEALA PDMDQQDGND KQDSIIHDEG PAADGLASIL GDAIEYVQEL 840 QKQAKQLQDE LDDHADDEGP KNSGITGHHN NIQSEIQSEL DPGGPKTDHQ HDSISKQSQD 900 SDVIHDHKTQ QMEPQVEVAQ LDGNQFFVKV FCEHKPGGFV RLMEALSSLS LEVINANVTS 960 FRCLVSNVFI VEVSFF

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence

MQNLTERLRP LVGLKDWDYC VIWKLSENQR FIELMDCCCS GADENTQTNG GQELLFPVYP  60
VLPCRDTMQH SRTNSCDVLA HLPSSLSLDS GIYAHPLISN QPIWLNSSSN RDSSAMAERD  120
GTRVLVPSAG GLIELFVSKD VSEDQQVIDY ITAQCNISKE QDTLLGAGCN TSFPVNINDM  180
STEIQPYVFP GNENEGNDHL NSNHFQQPPV VSSSVDHDSN VPYDISVDRI RLCSASPMNF  240
LQHVTYNSEN SMKNGNSNVY YEQRSNESLG GMGLQADADA SNMHNSMHVM EALENMEQQG  300
VEDQDSVKHE AQGGRTADNS GSDCSDQIDD EDDTKYRRRT GKGPQSKNLF AERKRRKKLN  360
ERLYRLRSLV PNISKMDKAA ILGDAIDYVK DLLRQVKELQ DELEQHSNDE GPNTKTSANI  420
CGNHNNFQPE ILNQNGTSIT NEPENDDKPP NGFHPQVGVT QLDGNELFVT VFCEHKPGGF  480
VRLMEALDTL GLEVTNANVT SFRSLVSNVL KVEKKDSEVV QADDVRDSLL EITRNPSSKV  540
WPEMAKAKAF IEWMDCCCSG TEITQYDAGQ DLLFPPVLPC RDAMLQHPRT TACDLLAKMP  600
SSLPLDSGFV PIYMETDGTK VLIPIPGGLI ELLVTKQVFE DQHVIDFITA QYSISLEQDT  660
LDNITGTSIM SEIESKNLLD NGNDQMDINN VLFQATLSSR ICSKLDNLNP PYDVSMGTIS  720
NSPIKFLQQF TNYNSGNRTK NSIDVSYGDA SHEPFLSDKQ MDPFICSAEN GFQEMEAMQR  780
SMMADETQQH MHMQYMEALA PDMDQQDGND KQDSIIHDEG PAADGLASIL GDAIEYVQEL  840
QKQAKQLQDE LDDHADDEGP KNSGITGHHN NIQSEIQSEL DPGGPKTDHQ HDSISKQSQD  900
SDVIHDHKTQ QMEPQVEVAQ LDGNQFFVKV FCEHKPGGFV RLMEALSSLS LEVINANVTS  960
FRCLVSNVFI VEVSFF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	337	358	RRRTGKGPQSKNLFAERKRRKK
2	352	359	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-105	bHLH family protein