PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g490120.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 818aa MW: 91915.4 Da PI: 6.8626

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g490120.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	114.6	5.3e-36	139	214	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv++C+ad++e+k yhrrh+vC ++++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k Pd.00g490120.m01 139 RCQVPSCRADIKELKGYHRRHRVCLACANASTVFLDGETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRK 214 6************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence
MEGPASPSST QSQQQRLDEA RFSEMEIQPP LPNQDTSTVW DWGDLLDFTV DDDLSISWGS 60 AEIDPAPAPA LEDLPEDPDS SSGRVRKRDP RLACTNFLAG HVPCACPEID ERMMELEEEE 120 AGHGKKRVKT ARAPPGTARC QVPSCRADIK ELKGYHRRHR VCLACANAST VFLDGETKRY 180 CQQCGKFHVL SDFDEGKRSC RRKLERHNNR RRRKPINSKG GIRKESQREI QIEDTNCDGG 240 AGEDSIQLSS QLNDKEELPE SEGGRISTLS SVPDSQIVNS DGGASLVASG ETQMDGRKHD 300 SNNSLSPPNC DKSAYSSMCP TGRISFKLYD WNPAEFPRRL RHQIFQWLAS MPVELEGYIR 360 PGCIILTVFI AMPKFMWMKL LEDPVSYIHD FVVVPGRMLS GRGNILVYLN DMIFRVVKDG 420 TSVIKGKVEM RAPRLHYVHP RYFEAGKPME FVACGSDLLQ PKFRFLVSFS GKYLAYNYYP 480 ESSPSQIEGD TATNLDHQLY KIRVPQTEAN RFGPAFIEIE NESGLSNFLP ILIADKEVCA 540 EMNTIQKRYE ESFSLQGSHF SSSGSLSDSC EASSLRHTAF SEVILDIAWL LKKPSSENFQ 600 QIMTASQIQR FNYLLNFLIS IKSTTILEKV SQNLKTLMDN MELHCANDGT SDADMRLLKN 660 YMDYARDRQK IDNSGVLVPR SGRLVQKEDI VSQSQSCFQN VGNLVVPLQC QDTEITVDGR 720 VDVMVGSTSH ERSETVPLLS KKAVMKANLI KKWPRVANFC TFGEVSRSRS SGAFLRFRPV 780 LYVICAAAIC LGFCAVLFHP HKVGEFAVTI RRCLFDNF

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence

MEGPASPSST QSQQQRLDEA RFSEMEIQPP LPNQDTSTVW DWGDLLDFTV DDDLSISWGS  60
AEIDPAPAPA LEDLPEDPDS SSGRVRKRDP RLACTNFLAG HVPCACPEID ERMMELEEEE  120
AGHGKKRVKT ARAPPGTARC QVPSCRADIK ELKGYHRRHR VCLACANAST VFLDGETKRY  180
CQQCGKFHVL SDFDEGKRSC RRKLERHNNR RRRKPINSKG GIRKESQREI QIEDTNCDGG  240
AGEDSIQLSS QLNDKEELPE SEGGRISTLS SVPDSQIVNS DGGASLVASG ETQMDGRKHD  300
SNNSLSPPNC DKSAYSSMCP TGRISFKLYD WNPAEFPRRL RHQIFQWLAS MPVELEGYIR  360
PGCIILTVFI AMPKFMWMKL LEDPVSYIHD FVVVPGRMLS GRGNILVYLN DMIFRVVKDG  420
TSVIKGKVEM RAPRLHYVHP RYFEAGKPME FVACGSDLLQ PKFRFLVSFS GKYLAYNYYP  480
ESSPSQIEGD TATNLDHQLY KIRVPQTEAN RFGPAFIEIE NESGLSNFLP ILIADKEVCA  540
EMNTIQKRYE ESFSLQGSHF SSSGSLSDSC EASSLRHTAF SEVILDIAWL LKKPSSENFQ  600
QIMTASQIQR FNYLLNFLIS IKSTTILEKV SQNLKTLMDN MELHCANDGT SDADMRLLKN  660
YMDYARDRQK IDNSGVLVPR SGRLVQKEDI VSQSQSCFQN VGNLVVPLQC QDTEITVDGR  720
VDVMVGSTSH ERSETVPLLS KKAVMKANLI KKWPRVANFC TFGEVSRSRS SGAFLRFRPV  780
LYVICAAAIC LGFCAVLFHP HKVGEFAVTI RRCLFDNF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	213	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	SBP family protein