PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g476430.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 321aa MW: 34969 Da PI: 7.9126

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g476430.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.2	1.4e-08	130	156	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f t Ck+G rCkF+H++ Pd.00g476430.m01 130 PGEPDCPYFINTQRCKFGMRCKFNHPK 156 5789*********************96 PP
2	zf-CCCH	32.3	1.7e-10	176	200	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f++++G+Ck+G++CkF+H++ Pd.00g476430.m01 176 RPGCAFYLKMGQCKFGATCKFHHPK 200 566********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MFTACTEVES FLGQLLYLHI NLGFTSPNNQ CRAISKDTAP AQSAAADAAA TAGLSRVYTS 60 RALTDSYLSD LTLRYLSGSV PSASATDHHS RSSSMYLATS HLISTPAFPA SNAPLKVPLV 120 APSEFLSERP GEPDCPYFIN TQRCKFGMRC KFNHPKDKLA AAVASENSDV FALPDRPGCA 180 FYLKMGQCKF GATCKFHHPK DIQIPSAEQE NKIGEIGTTI QLEGTGFAVK PPALSFNSKE 240 LPVRLGEPDC PFYLKTGSCK KVHTKFTEAW QGWEDYKPLH ERIKEADCVM EGLDKAINIL 300 NSVVPVKTCS CTCIAVTPKC R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	6e-49	C3H family protein