PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g471240.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 517aa MW: 56524.8 Da PI: 5.0579

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g471240.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	107	161	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k Pd.00g471240.m01 107 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 161 788899***********************************************98 PP
2	HD-ZIP_I/II	128.3	3.2e-41	107	196	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l Pd.00g471240.m01 107 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 196 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MPSLVPTSAS SPSGFLPQKP SWNETLISSD RNSNFETCRV GPRSFLRGID VNRLPSTGDC 60 EDEAGVSSPN STVSSVSGKR SEREANGEDL DIETRGISDE EDGETSRKKL RLSKDQSAIL 120 EESFKEHNTL NPKQKLALAK QLGLRPRQVE VWFQNRRART KLKQTEVDCE FLKRCCENLT 180 EENRRLQKEV QELRALKLSP QFYMQMTPPT TLTMCPSCER VAVPPNSSSS TVELRPHPHP 240 QMGSAPVTVA MSSSASNRDS TVADIEGSFG SRLVLTPREH VGVVIGSFDV SDSFVGFNYS 300 LVAKVLIDQL ANWDEFIRTV SQLWKGSADV CIKELTPIDF GCALLLQGVS GFCMTIAVAK 360 AIEATLGGVL WVDKRDACHS STISPSYKSP SDSSRQDGIW NHDSSGDCGS SDAQSWWSSS 420 LDQNELGFYL PMSLPRRPTV LDAVESLCCH AVSSDDVARS LLVSLLDLNV SALGISSMDV 480 PRILAVPMIS SHTGPLVTTQ ALVDPVLSDP FDLMHII

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MPSLVPTSAS SPSGFLPQKP SWNETLISSD RNSNFETCRV GPRSFLRGID VNRLPSTGDC  60
EDEAGVSSPN STVSSVSGKR SEREANGEDL DIETRGISDE EDGETSRKKL RLSKDQSAIL  120
EESFKEHNTL NPKQKLALAK QLGLRPRQVE VWFQNRRART KLKQTEVDCE FLKRCCENLT  180
EENRRLQKEV QELRALKLSP QFYMQMTPPT TLTMCPSCER VAVPPNSSSS TVELRPHPHP  240
QMGSAPVTVA MSSSASNRDS TVADIEGSFG SRLVLTPREH VGVVIGSFDV SDSFVGFNYS  300
LVAKVLIDQL ANWDEFIRTV SQLWKGSADV CIKELTPIDF GCALLLQGVS GFCMTIAVAK  360
AIEATLGGVL WVDKRDACHS STISPSYKSP SDSSRQDGIW NHDSSGDCGS SDAQSWWSSS  420
LDQNELGFYL PMSLPRRPTV LDAVESLCCH AVSSDDVARS LLVSLLDLNV SALGISSMDV  480
PRILAVPMIS SHTGPLVTTQ ALVDPVLSDP FDLMHII

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	112	SRKKLRL
2	156	164	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	2e-88	HD-ZIP family protein