PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g470670.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 397aa MW: 42950.3 Da PI: 6.9967

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g470670.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.7	2.7e-15	279	324	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq Pd.00g470670.m01 279 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKNLQ 324 9**********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MNQCVPSWDL DDISTPPAPR LSLRSSTPSA DVPMLDYEVA ELTWENGQVA MHGLGLPRLQ 60 AKPSLTTAKY TTWDKPRASG TLESIVNQAT STLPPPSKPP FDSSGGGASG ELVSWFDHHR 120 TTAVRSTAVT PSTTMTMDAL VPCRNQSDNS SSHMMESMSM PVVISGSDVV GCSTGVESCS 180 GATGAATQDD DTKLSGKHGS LSNVPETPEW SSRSQSVSGS ATFGMDNQPV TLDSTKASDH 240 DSVCHSRPQR EAGDEDDRKK RSTGKSSVST KRSRAAAIHN QSERKRRDKI NQRMKTLQKL 300 VPNSSKTDKA SMLDEVIEYL KNLQAQIQMM SRMNMPAMML PMAMQQQLQM SASATVMPDP 360 LSAFLACQSQ PMTMDAYSMM AAMYQQFHQP PASSSKS

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MNQCVPSWDL DDISTPPAPR LSLRSSTPSA DVPMLDYEVA ELTWENGQVA MHGLGLPRLQ  60
AKPSLTTAKY TTWDKPRASG TLESIVNQAT STLPPPSKPP FDSSGGGASG ELVSWFDHHR  120
TTAVRSTAVT PSTTMTMDAL VPCRNQSDNS SSHMMESMSM PVVISGSDVV GCSTGVESCS  180
GATGAATQDD DTKLSGKHGS LSNVPETPEW SSRSQSVSGS ATFGMDNQPV TLDSTKASDH  240
DSVCHSRPQR EAGDEDDRKK RSTGKSSVST KRSRAAAIHN QSERKRRDKI NQRMKTLQKL  300
VPNSSKTDKA SMLDEVIEYL KNLQAQIQMM SRMNMPAMML PMAMQQQLQM SASATVMPDP  360
LSAFLACQSQ PMTMDAYSMM AAMYQQFHQP PASSSKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	288	ERKRRD
2	284	289	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	7e-83	bHLH family protein