PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g466790.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 246aa MW: 26671 Da PI: 8.6728 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 68.9 | 1.1e-21 | 2 | 94 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+p+++r+ A+ r+ +Pv+Gavg++++++++++q+ Pd.00g466790.m01 2 SCNGCRVLRKGCSESCMLRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPDSQRP---------ACGRTVNPVNGAVGLLWTGNWHVCQA 87 6**********************************************************8.........89************************ PP DUF260 91 kaelall 97 ++e++l+ Pd.00g466790.m01 88 AVETVLR 94 *998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MSCNGCRVLR KGCSESCMLR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPDSQR 60 PACGRTVNPV NGAVGLLWTG NWHVCQAAVE TVLRGGTLRP IPELLGGGST SDEASNADGG 120 GVNNCTDMWR LRDPSHNSGS SSRFTSSRSA RASSPKRKRS ADDESSTKVL PLQHHADLDL 180 RLTPSLSFKL KPKPESRRAG TPSMNSEESV VTTCFESGLP DNHHHHQYNQ HSYGVGAERK 240 LLNLFP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-74 | LBD family protein |