PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g450760.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | YABBY | ||||||||
Protein Properties | Length: 188aa MW: 21292.1 Da PI: 8.0083 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 217.2 | 5.2e-67 | 6 | 161 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 + s+eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ + ++++ + + +n++ ++++ ++++ Pd.00g450760.m01 6 DVSTEQLCYIPCNFCNIVLAVSVPCSSLFDMVTVRCGHCTNLWSVNMAAAFQSLSWPDV--------QAQNYNYNAQNYRIESGSSSKCNKKI 90 5689********************************************99999998885........56666666666666555555544444 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + + ++v++ v+rPPekrqrvPsayn+fikeeiqrika+nPdish+eafs+aaknWahfP+ihfgl Pd.00g450760.m01 91 AT---RDPTADHVTEERGVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHKEAFSTAAKNWAHFPHIHFGL 161 44...4555666777778******************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence |
MTSCIDVSTE QLCYIPCNFC NIVLAVSVPC SSLFDMVTVR CGHCTNLWSV NMAAAFQSLS 60 WPDVQAQNYN YNAQNYRIES GSSSKCNKKI ATRDPTADHV TEERGVNRPP EKRQRVPSAY 120 NQFIKEEIQR IKANNPDISH KEAFSTAAKN WAHFPHIHFG LMLETNNQPK LDNDSEKHLM 180 SRAALLNK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.1 | 5e-87 | YABBY family protein |