PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g441980.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 607aa MW: 65484.3 Da PI: 8.4224

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g441980.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	97.4	1.2e-30	100	184	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f++lea Pd.00g441980.m01 100 RWPRQETLALLKIRSEMDVSFRDATLKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSELEA 184 8*******************************************************************866665..****985 PP
2	trihelix	107.6	8.1e-34	368	453	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r++++ k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a Pd.00g441980.m01 368 RWPKAEVLALIKLRSGLESRYQEAGPKGPLWEEISAGMGRMGYKRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 453 8*******************************************************************8.99999******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence
MQQGAGGAQT HYGVGAAEDM GATAGPSSSS MAAAAAEAGD QAQLVEAASP ISSRPPASAS 60 VNLDELMTLS GAAAAAEDAL AASRDEADRG GGGVGSSGNR WPRQETLALL KIRSEMDVSF 120 RDATLKGPLW EDVSRKLAEL GYKRSAKKCK EKFENVHKYY KRTKEGRAGR QDGKSYKFFS 180 ELEALHGTAA ATSSVNVSAS PAVHVTHASP NPVSIGFSNP MPISSFRMSP TIPVMQKQET 240 MQQRFLEVIE KREQDRTIRE EAWKRQEMAR LTREHELMSQ ERAISASRDA AIISFLQKIT 300 GQTIQLPPPV NVHAAPPPPV PPSVPVVTPL AQQSVVMAVP EQQVQPPQEN IASGGGAGGS 360 LEPASSSRWP KAEVLALIKL RSGLESRYQE AGPKGPLWEE ISAGMGRMGY KRSSKRCKEK 420 WENINKYFKK VKESNKKRPE DAKTCPYFHE LDALYRKRIL GGGGGGGSSS SLGTQNRLEQ 480 PQQQQLQLEN PKSDSATQPQ DRSLEAQPRV PVMPQTQEAV VATDQSEDKN GDHSTNVETS 540 NVGLRANLFG EATDEAAKKP EDTVKELMQQ QVHDHLQQGI EFQKQNTTGP SSNGGGNGAA 600 SFLAMVQ

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence

MQQGAGGAQT HYGVGAAEDM GATAGPSSSS MAAAAAEAGD QAQLVEAASP ISSRPPASAS  60
VNLDELMTLS GAAAAAEDAL AASRDEADRG GGGVGSSGNR WPRQETLALL KIRSEMDVSF  120
RDATLKGPLW EDVSRKLAEL GYKRSAKKCK EKFENVHKYY KRTKEGRAGR QDGKSYKFFS  180
ELEALHGTAA ATSSVNVSAS PAVHVTHASP NPVSIGFSNP MPISSFRMSP TIPVMQKQET  240
MQQRFLEVIE KREQDRTIRE EAWKRQEMAR LTREHELMSQ ERAISASRDA AIISFLQKIT  300
GQTIQLPPPV NVHAAPPPPV PPSVPVVTPL AQQSVVMAVP EQQVQPPQEN IASGGGAGGS  360
LEPASSSRWP KAEVLALIKL RSGLESRYQE AGPKGPLWEE ISAGMGRMGY KRSSKRCKEK  420
WENINKYFKK VKESNKKRPE DAKTCPYFHE LDALYRKRIL GGGGGGGSSS SLGTQNRLEQ  480
PQQQQLQLEN PKSDSATQPQ DRSLEAQPRV PVMPQTQEAV VATDQSEDKN GDHSTNVETS  540
NVGLRANLFG EATDEAAKKP EDTVKELMQQ QVHDHLQQGI EFQKQNTTGP SSNGGGNGAA  600
SFLAMVQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	151	KRSAKKCKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-65	Trihelix family protein