PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g440000.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 754aa MW: 83778 Da PI: 7.3673

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g440000.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	9.8e-07	551	575	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ ++rt C yG +C+F+H+ Pd.00g440000.m02 551 GEKDCPCYMRTLSCMYGTKCRFNHP 575 7789********************9 PP
2	zf-CCCH	19.9	1.3e-06	682	708	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+r G Ck+ ++Ck++H++ Pd.00g440000.m02 682 PGQPVCLYFSRAGDCKHKSNCKYHHPK 708 57899********************96 PP
3	zf-CCCH	22	2.9e-07	729	753	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C +++++G+C+ G CkF+H+ Pd.00g440000.m02 729 GQNICARYSAYGICNSGLACKFNHP 753 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence
MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLEKI RKLDPALLDK IRKFDPDVLD 60 ELRKIDPALL DGVRKVHPTL LDELRKVDPA VLQEMQLEPA EWDPAIIGAI RKLYLKLREE 120 DEEVAERSTC SGRQTNDNGG EVRKIGEERS RSQHYPVRPE AGEGKTGRKN RKNRKNNQNY 180 FSSGGQRPNL YASPNPGNDD VLSPNPGKVD TVLQVDPTEL DPAIIDAICK LSLKEKEEGE 240 QEVEVEKKVD DERSKRHHYP VRPPGAGDSS HNLKTGTHKF GSNCKFNHTR RSKNNQNYFR 300 SGGQHQNRYA PPNPGDNDSF SPNSDVPPNP SNDGVLPPNH SDTDCDLATL REILRHKTAL 360 LGIIRKLDAG LFGDIQKIDP AVLHEMQADP AEWDPAIIDA ICKLSLEEKD ENEEEVEKKV 420 DEERSRRHHY PVRPPGAGDS SHNLKTGTHQ FGSNCKFNLT CRSKNNQVSK NKMKEREGLA 480 EKPGKTECKV SKNKMKEREG LAAKPGKTEF KNYFRSGGCK SGNACALNPR RGEASVAPIL 540 ENFMGLPIRP GEKDCPCYMR TLSCMYGTKC RFNHPDPTPA GESDPPSGNG NGGPASLQGA 600 SSATAAQWYA PISLNNAPLY EPIMIPPSQE FPSQNTEWNG YQAPERSMPA PPPYVMNHSV 660 TETNTYEQYP QQKQVQEFPE RPGQPVCLYF SRAGDCKHKS NCKYHHPKNQ TAVPTSCALS 720 DKGLPLRPGQ NICARYSAYG ICNSGLACKF NHPS

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence

MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLEKI RKLDPALLDK IRKFDPDVLD  60
ELRKIDPALL DGVRKVHPTL LDELRKVDPA VLQEMQLEPA EWDPAIIGAI RKLYLKLREE  120
DEEVAERSTC SGRQTNDNGG EVRKIGEERS RSQHYPVRPE AGEGKTGRKN RKNRKNNQNY  180
FSSGGQRPNL YASPNPGNDD VLSPNPGKVD TVLQVDPTEL DPAIIDAICK LSLKEKEEGE  240
QEVEVEKKVD DERSKRHHYP VRPPGAGDSS HNLKTGTHKF GSNCKFNHTR RSKNNQNYFR  300
SGGQHQNRYA PPNPGDNDSF SPNSDVPPNP SNDGVLPPNH SDTDCDLATL REILRHKTAL  360
LGIIRKLDAG LFGDIQKIDP AVLHEMQADP AEWDPAIIDA ICKLSLEEKD ENEEEVEKKV  420
DEERSRRHHY PVRPPGAGDS SHNLKTGTHQ FGSNCKFNLT CRSKNNQVSK NKMKEREGLA  480
EKPGKTECKV SKNKMKEREG LAAKPGKTEF KNYFRSGGCK SGNACALNPR RGEASVAPIL  540
ENFMGLPIRP GEKDCPCYMR TLSCMYGTKC RFNHPDPTPA GESDPPSGNG NGGPASLQGA  600
SSATAAQWYA PISLNNAPLY EPIMIPPSQE FPSQNTEWNG YQAPERSMPA PPPYVMNHSV  660
TETNTYEQYP QQKQVQEFPE RPGQPVCLYF SRAGDCKHKS NCKYHHPKNQ TAVPTSCALS  720
DKGLPLRPGQ NICARYSAYG ICNSGLACKF NHPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	174	RKNRKNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	5e-80	C3H family protein