PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g440000.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 776aa MW: 86250.9 Da PI: 7.7013

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g440000.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	1e-06	573	597	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ ++rt C yG +C+F+H+ Pd.00g440000.m01 573 GEKDCPCYMRTLSCMYGTKCRFNHP 597 7789********************9 PP
2	zf-CCCH	19.9	1.3e-06	704	730	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+r G Ck+ ++Ck++H++ Pd.00g440000.m01 704 PGQPVCLYFSRAGDCKHKSNCKYHHPK 730 57899********************96 PP
3	zf-CCCH	22	3e-07	751	775	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C +++++G+C+ G CkF+H+ Pd.00g440000.m01 751 GQNICARYSAYGICNSGLACKFNHP 775 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence
MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLEKI RKLDPALLDK IRKFDPDVLD 60 ELRKIDPALL DGVRKVHPTL LDELRKVDPA VLQEMQLEPA EWDPAIIGAI RKLYLKLREE 120 DEEVAERSTC SGRQTNDNGG EVRKIGEERS RSQHYPVRPE AGEGKTGRKN RKNRKNNQNY 180 FSSGGQRPNL YASPNPGNDD VLSPNPGKVD TVLQVDPTEL DPAIIDAICK LSLKEKEEGE 240 QEVEVEKKVD DERSKRHHYP VRPPGAGDSS HNLKTGTHKF GSNCKFNHTR RSKNNQNYFR 300 SGGQHQNRYA PPNPGDNDSF SPNSDVPPNP SNDGVLPPNH SDTDCDLATL REILRHKTAL 360 LGIIRKLDAG LFGDIQKIDP AVLHEMQADP AEWDPAIIDA ICKLSLEEKD ENEEEVEKKV 420 DEERSRRHHY PVRPPGAGDS SHNLKTGTHQ FGSNCKFNLT CRSKNNQVSK NKMKEREGLA 480 EKPGKTECKV SKNKMKEREG LAEKPGKTEC KVSKNKMKER EGLAAKPGKT EFKNYFRSGG 540 CKSGNACALN PRRGEASVAP ILENFMGLPI RPGEKDCPCY MRTLSCMYGT KCRFNHPDPT 600 PAGESDPPSG NGNGGPASLQ GASSATAAQW YAPISLNNAP LYEPIMIPPS QEFPSQNTEW 660 NGYQAPERSM PAPPPYVMNH SVTETNTYEQ YPQQKQVQEF PERPGQPVCL YFSRAGDCKH 720 KSNCKYHHPK NQTAVPTSCA LSDKGLPLRP GQNICARYSA YGICNSGLAC KFNHPS

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence

MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLEKI RKLDPALLDK IRKFDPDVLD  60
ELRKIDPALL DGVRKVHPTL LDELRKVDPA VLQEMQLEPA EWDPAIIGAI RKLYLKLREE  120
DEEVAERSTC SGRQTNDNGG EVRKIGEERS RSQHYPVRPE AGEGKTGRKN RKNRKNNQNY  180
FSSGGQRPNL YASPNPGNDD VLSPNPGKVD TVLQVDPTEL DPAIIDAICK LSLKEKEEGE  240
QEVEVEKKVD DERSKRHHYP VRPPGAGDSS HNLKTGTHKF GSNCKFNHTR RSKNNQNYFR  300
SGGQHQNRYA PPNPGDNDSF SPNSDVPPNP SNDGVLPPNH SDTDCDLATL REILRHKTAL  360
LGIIRKLDAG LFGDIQKIDP AVLHEMQADP AEWDPAIIDA ICKLSLEEKD ENEEEVEKKV  420
DEERSRRHHY PVRPPGAGDS SHNLKTGTHQ FGSNCKFNLT CRSKNNQVSK NKMKEREGLA  480
EKPGKTECKV SKNKMKEREG LAEKPGKTEC KVSKNKMKER EGLAAKPGKT EFKNYFRSGG  540
CKSGNACALN PRRGEASVAP ILENFMGLPI RPGEKDCPCY MRTLSCMYGT KCRFNHPDPT  600
PAGESDPPSG NGNGGPASLQ GASSATAAQW YAPISLNNAP LYEPIMIPPS QEFPSQNTEW  660
NGYQAPERSM PAPPPYVMNH SVTETNTYEQ YPQQKQVQEF PERPGQPVCL YFSRAGDCKH  720
KSNCKYHHPK NQTAVPTSCA LSDKGLPLRP GQNICARYSA YGICNSGLAC KFNHPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	174	RKNRKNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	3e-76	C3H family protein