PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g417530.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 426aa MW: 46882.9 Da PI: 7.127 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40 | 6.6e-13 | 87 | 109 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+++++tG Ck+G++CkF+H+ Pd.00g417530.m01 87 EDCSYYLKTGSCKFGSNCKFNHP 109 89********************9 PP | |||||||
2 | zf-CCCH | 29.7 | 1.1e-09 | 131 | 155 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++r+G CkyG C+++H++ Pd.00g417530.m01 131 QTECKYYLRSGGCKYGKACRYSHSK 155 679********************95 PP | |||||||
3 | zf-CCCH | 34.9 | 2.6e-11 | 176 | 200 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G Cky ++C+F+H+ Pd.00g417530.m01 176 GERECPYYMRNGSCKYASNCRFNHP 200 5799********************9 PP | |||||||
4 | zf-CCCH | 22.1 | 2.6e-07 | 316 | 337 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f+rtG Ck+ ++Ck++H++ Pd.00g417530.m01 316 CSYFLRTGDCKFKSNCKYHHPK 337 ********************96 PP | |||||||
5 | zf-CCCH | 33 | 1e-10 | 359 | 382 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++r+G+Ck+G+ CkF H+ Pd.00g417530.m01 359 QNICTHYSRYGICKFGPVCKFDHP 382 679********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence |
MEVSEAISVP PNLDANNHHI DEHHQPSHSE IGFLPSSPDP DPAPSDFDQA SEQSDGGENQ 60 SEDGGDAEKK AEESRRRYQY PVRPEAEDCS YYLKTGSCKF GSNCKFNHPV KRKGSKDKVK 120 EREEFGDKTG QTECKYYLRS GGCKYGKACR YSHSKGKPSV APVVELNFLG LPIRLGEREC 180 PYYMRNGSCK YASNCRFNHP DPTAAGGSDP ASAFGNGGPA SLQGVPQSTV APWSAPRSLN 240 ETPLYVPMMI PPSQGVPSQN TEWNGYQAPA YLPERSMPAR QPYLMNNSMT ETNIYKQYPQ 300 HQQAEEFPER PGQPFCSYFL RTGDCKFKSN CKYHHPKTQT AVSPQCALSD KGLPLRPDQN 360 ICTHYSRYGI CKFGPVCKFD HPLNITSSTT SGPDHQLPFS DSATTNGAGT AGSRSGTDAI 420 SQLQPV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-131 | C3H family protein |