PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g417520.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1193aa MW: 129051 Da PI: 6.7308

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g417520.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.9	2.6e-11	190	212	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+f+++tGtCk+G++CkF+H++ Pd.00g417520.m01 190 DCSFYLKTGTCKFGSSCKFNHPR 212 5********************96 PP
2	zf-CCCH	24.4	4.9e-08	283	306	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f++r+ C +G +C+F+H+ Pd.00g417520.m01 283 EKDCSFYMRNASCMFGTNCRFNHP 306 679********************9 PP
3	zf-CCCH	24.6	4.2e-08	680	704	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f++r+ C +G +C+F+H+ Pd.00g417520.m01 680 GEKDCSFYMRNASCMFGTNCRFNHP 704 7889********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1193 aa Download sequence
MLPAARFLLP VSVSVLYVLY KDLRSGRATE LSEDIAVPLN PDNNDVVSRQ PSHLDPAILE 60 EIRKFDPAVL DEFRKFDPAL LDEFRKFDPA ALDEFRKFDP AALDVIRKLD PAIIDQIHKL 120 CVKEKVEGKE EAERNCSGRE NENGNETQSE ESGGGGGENK NENGGEVEKK VVNEERSRRH 180 HYPVRPEAGD CSFYLKTGTC KFGSSCKFNH PRRRKTNKVS KVKMKEREGL AAEKPGLTES 240 KDYSGSGGCK YEKPCSFNPR REEPSVAPIL ECNFLGLPIR PEEKDCSFYM RNASCMFGTN 300 CRFNHPDPTA ARESDPPSGY GNGGSASLQG ALSSTAAPWS APRSLNDAPL YVPMVIPPSQ 360 GIPSQDTEWN GYQAPAYLQE RSMPAHQPYL MNNSVTGTNV YKQYPHQQAE EFPERPGQPY 420 PPHAPFETRS EHLHTLHSLW AFANLGQLVN LTILLYRFYK YLRTELIRVP QNPPELSDLD 480 LAILEEIRKL GPALLDKILK DPTLLDEFRK IDPAVLHEFR KLDPAIIGKI LQFCLKDNKE 540 GEEEEDRSTC SGRETAKQNE NGNEETDGGG GENKNENGGE VEKKVVDEER SRSQHYPVRP 600 GAGEGKTARK NRKNNQVSKD KMKEREGLAA EKPGQTECKD YSRSGGRKYE KACSLNPGRG 660 EPSVAPILEC NFLGLPIRPG EKDCSFYMRN ASCMFGTNCR FNHPDPTAAR ESEPPSGYGN 720 GGSASLQSAS SSTAAPWSAP RSLNDAPLYV PMVIPHVQIG SWGNADGVWA QSEAGNKDEA 780 SGWTKPAFIN ENQNDSWKKP SGVDDNKRAS WGKADGGSTW TKQDGDATWN KQGEGSTWNK 840 QDGSSDWNKP AGDSSWSKQA GGSSWGKQAD VTAGHESGGV GNQDIGWKRA SSFGGSQSID 900 GVNGDQPEDF NNNRSGGNWR GGSGRGNSDR GGFRGGRGFV GRGGDREEDR GGFGGRGGDR 960 GSFGGRGRSD KGGFGGRGYG GRGRGRYQSG GWSNRNESIE NNSSGWSKGA DGAGEGWKKD 1020 NGGGSWNQTV EPKYTAGTQD KGTGSHNEVG RSWGNNWKSS DASNGDQSSR WKQSTAAEEV 1080 KGNTDQDGGW NKGPSSNAQA GGWGNQGSGW NKGTGSGFGG GTGEHPSAAV GGQSSDWKQS 1140 SAAGGAQSSS WNQSGEAKQG TDEGAKPTIS WGKAAAASSW GKGSDGGSSK GGW

Sequence ? help Back to Top

Protein Sequence Length: 1193 aa Download sequence

MLPAARFLLP VSVSVLYVLY KDLRSGRATE LSEDIAVPLN PDNNDVVSRQ PSHLDPAILE  60
EIRKFDPAVL DEFRKFDPAL LDEFRKFDPA ALDEFRKFDP AALDVIRKLD PAIIDQIHKL  120
CVKEKVEGKE EAERNCSGRE NENGNETQSE ESGGGGGENK NENGGEVEKK VVNEERSRRH  180
HYPVRPEAGD CSFYLKTGTC KFGSSCKFNH PRRRKTNKVS KVKMKEREGL AAEKPGLTES  240
KDYSGSGGCK YEKPCSFNPR REEPSVAPIL ECNFLGLPIR PEEKDCSFYM RNASCMFGTN  300
CRFNHPDPTA ARESDPPSGY GNGGSASLQG ALSSTAAPWS APRSLNDAPL YVPMVIPPSQ  360
GIPSQDTEWN GYQAPAYLQE RSMPAHQPYL MNNSVTGTNV YKQYPHQQAE EFPERPGQPY  420
PPHAPFETRS EHLHTLHSLW AFANLGQLVN LTILLYRFYK YLRTELIRVP QNPPELSDLD  480
LAILEEIRKL GPALLDKILK DPTLLDEFRK IDPAVLHEFR KLDPAIIGKI LQFCLKDNKE  540
GEEEEDRSTC SGRETAKQNE NGNEETDGGG GENKNENGGE VEKKVVDEER SRSQHYPVRP  600
GAGEGKTARK NRKNNQVSKD KMKEREGLAA EKPGQTECKD YSRSGGRKYE KACSLNPGRG  660
EPSVAPILEC NFLGLPIRPG EKDCSFYMRN ASCMFGTNCR FNHPDPTAAR ESEPPSGYGN  720
GGSASLQSAS SSTAAPWSAP RSLNDAPLYV PMVIPHVQIG SWGNADGVWA QSEAGNKDEA  780
SGWTKPAFIN ENQNDSWKKP SGVDDNKRAS WGKADGGSTW TKQDGDATWN KQGEGSTWNK  840
QDGSSDWNKP AGDSSWSKQA GGSSWGKQAD VTAGHESGGV GNQDIGWKRA SSFGGSQSID  900
GVNGDQPEDF NNNRSGGNWR GGSGRGNSDR GGFRGGRGFV GRGGDREEDR GGFGGRGGDR  960
GSFGGRGRSD KGGFGGRGYG GRGRGRYQSG GWSNRNESIE NNSSGWSKGA DGAGEGWKKD  1020
NGGGSWNQTV EPKYTAGTQD KGTGSHNEVG RSWGNNWKSS DASNGDQSSR WKQSTAAEEV  1080
KGNTDQDGGW NKGPSSNAQA GGWGNQGSGW NKGTGSGFGG GTGEHPSAAV GGQSSDWKQS  1140
SAAGGAQSSS WNQSGEAKQG TDEGAKPTIS WGKAAAASSW GKGSDGGSSK GGW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	215	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-59	C3H family protein