PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g417490.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 766aa MW: 85190.8 Da PI: 8.0072

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g417490.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.1e-06	563	587	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ ++rt C yG +C+F+H+ Pd.00g417490.m02 563 GEKDCPCYMRTLSCTYGMKCRFNHP 587 7789********************9 PP
2	zf-CCCH	19.9	1.3e-06	694	720	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+r G Ck+ ++Ck++H++ Pd.00g417490.m02 694 PGQPVCLYFSRAGDCKHKSNCKYHHPK 720 57899********************96 PP
3	zf-CCCH	22	2.9e-07	741	765	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C +++++G+C+ G CkF+H+ Pd.00g417490.m02 741 GQNICARYSAYGICNSGLACKFNHP 765 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence
MLTAPIGLPN PDVSPNAELS DLDLAILEEI RKLDALLEKI RKLDPALLDK IRKFDPDVLD 60 ELRKIDPALL DGLRKIHPTL LDELRKVDPA VLQEMQLEPA EWDTAIIGAI RKLYLKLREE 120 DEEVAESKRS RSQHYPVRTE AGEGKTGRKN RKNRKNNQNY FRSGGQRPNL YASPNPGNDD 180 VLSPNPGKVD TVLQVDPAEL DPAIIDAICK LSLKEKEEGE QEVEVEKKVD DERSRRHHYP 240 VRPPGAGDSS HNLKTGTHKF GSNCKFNCTR RSKNNQVSKD KMKEREGLAE KPSQTECKNY 300 FRSGGQRQNL YAPPNPGDND SFPPNSDVPP NPGNDGVLPQ NPGKDDVLPP NHGDTDCDLA 360 TLREILRHKT ALLGIIRKLD AGLFGDIQKI NPAACLEMQA NPAEWDPAII DAICKLSSEE 420 KDESEEEVEK KVGEERSRRH HYPVRPPRAG DSSHNLKTGT HQFGSNCKFN LTSRSKNNQV 480 SKNKMKEREG LAEKPGKTEC KVSKNKMKER EGLAEKPGKT EFKNYFRSGG HKSGNACAFN 540 PRRGEASIAP ILENFMGLPI RPGEKDCPCY MRTLSCTYGM KCRFNHPDPT PAGESDPPSG 600 NGNGGPASLQ GASSATAARW YAPGSLNNAP LYEPIMIPPS QEFPSQNTEW NGYQAPERSM 660 PAPPPYVMNH SVTETNTYEQ YPQQKQVQEF PERPGQPVCL YFSRAGDCKH KSNCKYHHPK 720 NQTAVPTSCA LSDKGLPLRP GQNICARYSA YGICNSGLAC KFNHPS

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence

MLTAPIGLPN PDVSPNAELS DLDLAILEEI RKLDALLEKI RKLDPALLDK IRKFDPDVLD  60
ELRKIDPALL DGLRKIHPTL LDELRKVDPA VLQEMQLEPA EWDTAIIGAI RKLYLKLREE  120
DEEVAESKRS RSQHYPVRTE AGEGKTGRKN RKNRKNNQNY FRSGGQRPNL YASPNPGNDD  180
VLSPNPGKVD TVLQVDPAEL DPAIIDAICK LSLKEKEEGE QEVEVEKKVD DERSRRHHYP  240
VRPPGAGDSS HNLKTGTHKF GSNCKFNCTR RSKNNQVSKD KMKEREGLAE KPSQTECKNY  300
FRSGGQRQNL YAPPNPGDND SFPPNSDVPP NPGNDGVLPQ NPGKDDVLPP NHGDTDCDLA  360
TLREILRHKT ALLGIIRKLD AGLFGDIQKI NPAACLEMQA NPAEWDPAII DAICKLSSEE  420
KDESEEEVEK KVGEERSRRH HYPVRPPRAG DSSHNLKTGT HQFGSNCKFN LTSRSKNNQV  480
SKNKMKEREG LAEKPGKTEC KVSKNKMKER EGLAEKPGKT EFKNYFRSGG HKSGNACAFN  540
PRRGEASIAP ILENFMGLPI RPGEKDCPCY MRTLSCTYGM KCRFNHPDPT PAGESDPPSG  600
NGNGGPASLQ GASSATAARW YAPGSLNNAP LYEPIMIPPS QEFPSQNTEW NGYQAPERSM  660
PAPPPYVMNH SVTETNTYEQ YPQQKQVQEF PERPGQPVCL YFSRAGDCKH KSNCKYHHPK  720
NQTAVPTSCA LSDKGLPLRP GQNICARYSA YGICNSGLAC KFNHPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	154	RKNRKNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-77	C3H family protein