PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g417490.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 788aa MW: 87591.6 Da PI: 8.2937

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g417490.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.1e-06	585	609	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ ++rt C yG +C+F+H+ Pd.00g417490.m01 585 GEKDCPCYMRTLSCTYGMKCRFNHP 609 7789********************9 PP
2	zf-CCCH	19.8	1.4e-06	716	742	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+r G Ck+ ++Ck++H++ Pd.00g417490.m01 716 PGQPVCLYFSRAGDCKHKSNCKYHHPK 742 57899********************96 PP
3	zf-CCCH	21.9	3e-07	763	787	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C +++++G+C+ G CkF+H+ Pd.00g417490.m01 763 GQNICARYSAYGICNSGLACKFNHP 787 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 788 aa Download sequence
MLTAPIGLPN PDVSPNAELS DLDLAILEEI RKLDALLEKI RKLDPALLDK IRKFDPDVLD 60 ELRKIDPALL DGLRKIHPTL LDELRKVDPA VLQEMQLEPA EWDTAIIGAI RKLYLKLREE 120 DEEVAESKRS RSQHYPVRTE AGEGKTGRKN RKNRKNNQNY FRSGGQRPNL YASPNPGNDD 180 VLSPNPGKVD TVLQVDPAEL DPAIIDAICK LSLKEKEEGE QEVEVEKKVD DERSRRHHYP 240 VRPPGAGDSS HNLKTGTHKF GSNCKFNCTR RSKNNQVSKD KMKEREGLAE KPSQTECKNY 300 FRSGGQRQNL YAPPNPGDND SFPPNSDVPP NPGNDGVLPQ NPGKDDVLPP NHGDTDCDLA 360 TLREILRHKT ALLGIIRKLD AGLFGDIQKI NPAACLEMQA NPAEWDPAII DAICKLSSEE 420 KDESEEEVEK KVGEERSRRH HYPVRPPRAG DSSHNLKTGT HQFGSNCKFN LTSRSKNNQV 480 SKNKMKEREG LAEKPGKTEC KVSKNKMKER EGLAGKPGKT ECKVSKNKMK EREGLAEKPG 540 KTEFKNYFRS GGHKSGNACA FNPRRGEASI APILENFMGL PIRPGEKDCP CYMRTLSCTY 600 GMKCRFNHPD PTPAGESDPP SGNGNGGPAS LQGASSATAA RWYAPGSLNN APLYEPIMIP 660 PSQEFPSQNT EWNGYQAPER SMPAPPPYVM NHSVTETNTY EQYPQQKQVQ EFPERPGQPV 720 CLYFSRAGDC KHKSNCKYHH PKNQTAVPTS CALSDKGLPL RPGQNICARY SAYGICNSGL 780 ACKFNHPS

Sequence ? help Back to Top

Protein Sequence Length: 788 aa Download sequence

MLTAPIGLPN PDVSPNAELS DLDLAILEEI RKLDALLEKI RKLDPALLDK IRKFDPDVLD  60
ELRKIDPALL DGLRKIHPTL LDELRKVDPA VLQEMQLEPA EWDTAIIGAI RKLYLKLREE  120
DEEVAESKRS RSQHYPVRTE AGEGKTGRKN RKNRKNNQNY FRSGGQRPNL YASPNPGNDD  180
VLSPNPGKVD TVLQVDPAEL DPAIIDAICK LSLKEKEEGE QEVEVEKKVD DERSRRHHYP  240
VRPPGAGDSS HNLKTGTHKF GSNCKFNCTR RSKNNQVSKD KMKEREGLAE KPSQTECKNY  300
FRSGGQRQNL YAPPNPGDND SFPPNSDVPP NPGNDGVLPQ NPGKDDVLPP NHGDTDCDLA  360
TLREILRHKT ALLGIIRKLD AGLFGDIQKI NPAACLEMQA NPAEWDPAII DAICKLSSEE  420
KDESEEEVEK KVGEERSRRH HYPVRPPRAG DSSHNLKTGT HQFGSNCKFN LTSRSKNNQV  480
SKNKMKEREG LAEKPGKTEC KVSKNKMKER EGLAGKPGKT ECKVSKNKMK EREGLAEKPG  540
KTEFKNYFRS GGHKSGNACA FNPRRGEASI APILENFMGL PIRPGEKDCP CYMRTLSCTY  600
GMKCRFNHPD PTPAGESDPP SGNGNGGPAS LQGASSATAA RWYAPGSLNN APLYEPIMIP  660
PSQEFPSQNT EWNGYQAPER SMPAPPPYVM NHSVTETNTY EQYPQQKQVQ EFPERPGQPV  720
CLYFSRAGDC KHKSNCKYHH PKNQTAVPTS CALSDKGLPL RPGQNICARY SAYGICNSGL  780
ACKFNHPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	154	RKNRKNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	7e-75	C3H family protein