PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g413880.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 375aa MW: 41043.4 Da PI: 6.7191

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g413880.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.6	6.6e-36	64	180	2	102
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceae 76 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++ s +++ Pd.00g413880.m01 64 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELppwhpitgvaannaepdqS-------NPN 149 79**************************************************************7777776665544433210.......111 PP TCP 77 sssssasnsssg................kaaksaakskksqk 102 + ++ + + ++++++ Pd.00g413880.m01 150 E----------MviaggaeetessgynfHQLQRQ-MGENNNN 180 1..........12222222222222222111111.1111111 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MYAHCCCFFR GNLPDQTLPP LTDVFTALIV IGQGFIGVRN LEIAMAEFLG LAAAATGGHI 60 VRSTGRKDRH SKVYTAKGPR DRRVRLSAHT AIQFYDVQDR LGYDRPSKAV DWLIKKAKSS 120 IDKLAELPPW HPITGVAANN AEPDQSNPNE MVIAGGAEET ESSGYNFHQL QRQMGENNNN 180 QANNVSSFNI PPSLDSDTIA DTMKSFFPTS SAATSSINFQ SYPPDHDLIS RTTNLNPCQD 240 LGLSLHSFQD QGLNIHHTHS QQSQGDTNHN NDQIQTLFAA GAGGSTVGFD TSYQRMVAWS 300 NQNRGGDGGF VFNSHSQALP QQAYAHAQGG TLQSSFSPSI DHHPLPLPIP PTIDWITNSI 360 FGVSNWETRR KIQSN

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MYAHCCCFFR GNLPDQTLPP LTDVFTALIV IGQGFIGVRN LEIAMAEFLG LAAAATGGHI  60
VRSTGRKDRH SKVYTAKGPR DRRVRLSAHT AIQFYDVQDR LGYDRPSKAV DWLIKKAKSS  120
IDKLAELPPW HPITGVAANN AEPDQSNPNE MVIAGGAEET ESSGYNFHQL QRQMGENNNN  180
QANNVSSFNI PPSLDSDTIA DTMKSFFPTS SAATSSINFQ SYPPDHDLIS RTTNLNPCQD  240
LGLSLHSFQD QGLNIHHTHS QQSQGDTNHN NDQIQTLFAA GAGGSTVGFD TSYQRMVAWS  300
NQNRGGDGGF VFNSHSQALP QQAYAHAQGG TLQSSFSPSI DHHPLPLPIP PTIDWITNSI  360
FGVSNWETRR KIQSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	7e-52	TCP family protein