PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g411900.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 698aa MW: 77387.4 Da PI: 6.9999

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g411900.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.9	1.9e-23	127	227	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +k+a+e+ +++ + +++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + + Pd.00g411900.m01 127 FCKILTASDTSTHGGFSVLRKHATEClppldMIQATPTQELNAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGD 217 99**************************9556666679********************************************..348 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r Pd.00g411900.m01 218 NGELRVGVRR 227 9999**98 PP
2	Auxin_resp	101.9	8e-34	253	332	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t++ F v+Y+Pr+ s+F++ ++k+++a+++k+svGmRfkm+fe+e+s+err++Gt+vgv dl++ +W++SkWrsLk Pd.00g411900.m01 253 ASHALMTRTLFVVYYKPRT--SQFIIGLNKYLEAINNKFSVGMRFKMRFEGEESPERRFTGTIVGVGDLSS-QWSESKWRSLK 332 6899************6..9******************************************777.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MAHLECDSSI SRAETGFGGG DLYTELWKLC AGPLVDVPRP GERVFYFPQG HMEQLEASTN 60 QELNQQIPLF NLPSKILCRV VHIHLLAEQE TDEVYAQITL HPEADQSEPT SPDPCIPEPS 120 KPTVHSFCKI LTASDTSTHG GFSVLRKHAT ECLPPLDMIQ ATPTQELNAK DLHGYEWKFK 180 HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGDNGE LRVGVRRLAR QQSPMPSSVI 240 SSQSMHLGVL ATASHALMTR TLFVVYYKPR TSQFIIGLNK YLEAINNKFS VGMRFKMRFE 300 GEESPERRFT GTIVGVGDLS SQWSESKWRS LKIQWDEHAA VQRPDRVSPW EIEPFVASAP 360 IHLAQPVVKS KRPRPVEISS SEITTNSPAS AFWYHGSTQT VELNQLGGVP EVQSSGSQVV 420 WPLRQKESNS SSYSSSRVYS EGIWPSSPHV NVSLSLFPDS KEGNKNVTTG SVLSSVASPV 480 SSKASSKPSN TPIPGQVGKD KKSDSSDLWL FGYNLTNNSK PASPPESKPV CKAMSCGGKG 540 PITAAAFEVD QDLDVSKLSK EQKQVISEAS PGETQGKQGL TLSTRTRTKV QMQGVAVGRA 600 VDLTSLKGYD NLIDELEKMF EIKGELRPQN KWAVVFTDDE NDMMLMGDDQ WLDFCKLVKK 660 IYIYSSDEVQ KMNRCKLQNS SLDCEGTVSV DSEHRCET

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MAHLECDSSI SRAETGFGGG DLYTELWKLC AGPLVDVPRP GERVFYFPQG HMEQLEASTN  60
QELNQQIPLF NLPSKILCRV VHIHLLAEQE TDEVYAQITL HPEADQSEPT SPDPCIPEPS  120
KPTVHSFCKI LTASDTSTHG GFSVLRKHAT ECLPPLDMIQ ATPTQELNAK DLHGYEWKFK  180
HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGDNGE LRVGVRRLAR QQSPMPSSVI  240
SSQSMHLGVL ATASHALMTR TLFVVYYKPR TSQFIIGLNK YLEAINNKFS VGMRFKMRFE  300
GEESPERRFT GTIVGVGDLS SQWSESKWRS LKIQWDEHAA VQRPDRVSPW EIEPFVASAP  360
IHLAQPVVKS KRPRPVEISS SEITTNSPAS AFWYHGSTQT VELNQLGGVP EVQSSGSQVV  420
WPLRQKESNS SSYSSSRVYS EGIWPSSPHV NVSLSLFPDS KEGNKNVTTG SVLSSVASPV  480
SSKASSKPSN TPIPGQVGKD KKSDSSDLWL FGYNLTNNSK PASPPESKPV CKAMSCGGKG  540
PITAAAFEVD QDLDVSKLSK EQKQVISEAS PGETQGKQGL TLSTRTRTKV QMQGVAVGRA  600
VDLTSLKGYD NLIDELEKMF EIKGELRPQN KWAVVFTDDE NDMMLMGDDQ WLDFCKLVKK  660
IYIYSSDEVQ KMNRCKLQNS SLDCEGTVSV DSEHRCET

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	371	375	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.1	0.0	ARF family protein