PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g408880.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 250aa    MW: 28197.9 Da    PI: 8.1503
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g408880.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.82.9e-191562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WTteEde+l d+++++G g+W++ ++  g++R++k+c++rw +yl
  Pd.00g408880.m01 15 KGPWTTEEDEKLMDYIARHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                      79********************************************97 PP
2Myb_DNA-binding513.2e-1668113148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++++E+  +++++   G++ W++Ia +++ gRt++++k++w+++l
  Pd.00g408880.m01  68 RGKFSEDEERVIINLHSVVGNK-WSKIATHLP-GRTDNEIKNYWNTHL 113
                       89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MGRSPSCDEQ SGLKKGPWTT EEDEKLMDYI ARHGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEDEERVII NLHSVVGNKW SKIATHLPGR TDNEIKNYWN THLRKKLLHM  120
GIDPNTHKPR TDLNNLLNLS QLLSAANVGQ MNMSSWDNAL SLRLQAGAAQ LAKMQLLQHL  180
CMQTKNPFPA LVSASSGTSC NTNTNQMENS MSGDPAADCF STHSPTAIFE AWEKLMDDET  240
SESYWKDILE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-83MYB family protein