PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g408690.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 313aa MW: 34683.7 Da PI: 8.7921

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g408690.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.1	1.2e-11	116	164	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + + + a+i+ A+e++k+L+ Pd.00g408690.m01 116 QRMTHIAVERNRRKQMNEHLAILRSLMPDS---Y---GDQASIVGGAIEFVKELE 164 79***************************7...3...678999999999999985 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MTMALEALTS NEPFNFIIYD TISAIPYSFQ DSSGTTSNFI PPDKYFCTST SSMKSDQDTQ 60 IKRALNLEAA AAGGGGRQKQ SSLGVNNNNA QQQQQGRKKR RRKPRVCKNK EEAETQRMTH 120 IAVERNRRKQ MNEHLAILRS LMPDSYGDQA SIVGGAIEFV KELEHLLHSL EAQKLQLLHN 180 ADVSTSTSTS KVVQTPLAQL LGCPQYTWSH CPNKFTSKTK AAVADIEVTL IETHANLKIM 240 SRRISPRQLS KLVGGIQSLQ LTILHLTVTT MDPFVLYSIS VKIEEGCLLS SVDDIATAIH 300 HMLRVIEEAA ALC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	103	RKKRRRK
2	97	104	RKKRRRKP
3	98	103	KKRRRK
4	117	128	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	9e-64	bHLH family protein