PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g405700.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 237aa    MW: 26687.4 Da    PI: 9.7644
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g405700.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.74e-1516100186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W+++ + +Li+a  ++  +l+rg+l++++W+ev++++        + +++ +qCk++++ l+k+yk +k   +       st+p++++l+
  Pd.00g405700.m01  16 CWSEDATSTLITAWGDRYLQLNRGNLRQNDWKEVADAVnsglnGGVKASKTDVQCKNRIDTLKKKYKLEKSKPSP------STWPFYHRLH 100
                       7*************************************99944444557899***************99887775......68******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MHRPTRTRAP GGRDDCWSED ATSTLITAWG DRYLQLNRGN LRQNDWKEVA DAVNSGLNGG  60
VKASKTDVQC KNRIDTLKKK YKLEKSKPSP STWPFYHRLH SLIGSSPDAA VSTKRKPSIP  120
TLTVKSPDLK PKPPGGSTES SIGCEDGEDC NGDGVRKRRM EAVGLSGGAA CRELAGAILK  180
FGELYERMEN LKQEQMMELE KQRMEFTKEL EFQRLNMFKD AQVELEKMKR PRKEVIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.12e-61Trihelix family protein