PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g405410.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 507aa MW: 55956.6 Da PI: 8.0221

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g405410.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.8	1.9e-13	84	130	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN +++Lr+l+Pk+ K++Ka+ L +++++k+L Pd.00g405410.m01 84 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDHVKDL 130 79***********************8.....7**************99 PP
2	Myb_DNA-binding	52.4	1.2e-16	281	325	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+W+++Ed l+++v+q+G+++W++I+ ++ gR +k+c++rw + Pd.00g405410.m01 281 GSWSPQEDSTLIKLVAQHGPRNWSLISTGIP-GRYGKSCRLRWCNQ 325 79***************************.*********985 PP
3	Myb_DNA-binding	57	4.4e-18	334	376	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++Ed ++v+a++++G++ W+tIar ++ gRt++ +k++w++ Pd.00g405410.m01 334 SFTPQEDNIIVRAHALHGNK-WATIARLLP-GRTDNAIKNHWNST 376 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MESKVLEKCW LFLAMENCYR AGPQGATWAP YNSAALSNES SRFPLPWPPH ASSSTQFQFC 60 GFPNSWSAAA EGADEEDRAA TASKSHSQAE KRRRDRINAQ LATLRKLIPK SDKMDKAALL 120 GSVIDHVKDL KRKAMEVSKA FMVPTEMDEI TIDSDPAQAA ANSSSNNINM NKSRCSIVIR 180 ASVCCDDRPE LFSELIQVLK GLKLTAVRAD MASVGGRIKS VLVLCKDGEE DEALCISTLK 240 QSLKLVLSKI CASSMAPNCR IRSKRQRCHL SLPLQFDAIE GSWSPQEDST LIKLVAQHGP 300 RNWSLISTGI PGRYGKSCRL RWCNQLSPTV QHKSFTPQED NIIVRAHALH GNKWATIARL 360 LPGRTDNAIK NHWNSTLRRR RQLAELSSTS SDSNSAAPIR YEAGMKRQCL RVSPEPDSFK 420 ADVGGAGVVE TSLTLSPPGE KEENEVVLKS EDHDDEGKCA VEMEETCLLT IMQRMIAQEV 480 RNYVDSLRAE DGPTSFGLQS AALQNDP

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MESKVLEKCW LFLAMENCYR AGPQGATWAP YNSAALSNES SRFPLPWPPH ASSSTQFQFC  60
GFPNSWSAAA EGADEEDRAA TASKSHSQAE KRRRDRINAQ LATLRKLIPK SDKMDKAALL  120
GSVIDHVKDL KRKAMEVSKA FMVPTEMDEI TIDSDPAQAA ANSSSNNINM NKSRCSIVIR  180
ASVCCDDRPE LFSELIQVLK GLKLTAVRAD MASVGGRIKS VLVLCKDGEE DEALCISTLK  240
QSLKLVLSKI CASSMAPNCR IRSKRQRCHL SLPLQFDAIE GSWSPQEDST LIKLVAQHGP  300
RNWSLISTGI PGRYGKSCRL RWCNQLSPTV QHKSFTPQED NIIVRAHALH GNKWATIARL  360
LPGRTDNAIK NHWNSTLRRR RQLAELSSTS SDSNSAAPIR YEAGMKRQCL RVSPEPDSFK  420
ADVGGAGVVE TSLTLSPPGE KEENEVVLKS EDHDDEGKCA VEMEETCLLT IMQRMIAQEV  480
RNYVDSLRAE DGPTSFGLQS AALQNDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	6e-50	MYB family protein