PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g404590.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 433aa MW: 47360.1 Da PI: 5.8236

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g404590.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.4e-17	49	94	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd l ++v ++G ++W++Iar ++ gR++k+c++rw + Pd.00g404590.m01 49 RGPWSPEEDAVLSRLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 94 89****************************.*********985 PP
2	Myb_DNA-binding	57.4	3.3e-18	101	145	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++++eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ Pd.00g404590.m01 101 RKPFSEEEDHIIVSAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 145 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MTVPNDAVSK QADDRPAESE LVRGTEAELI ELGDVTELNE GGLSSGKVRG PWSPEEDAVL 60 SRLVSKFGAR NWSLIARGIP GRSGKSCRLR WCNQLDPCVK RKPFSEEEDH IIVSAHAIHG 120 NKWAAIARLL PGRTDNAIKN HWNSTLRRKC IDRGKFKPEP DMMEDASFDR TKASSEETLS 180 VGNISSFKTP EGREVLMDNR LDQLDERVQA KEGCGVAESN YHSTLLAGSR GHPTLLGESK 240 EQSSLCRPVA RVSAFSVYDP PSGLANTSTF SRIVPGHGPL VQTCKLDFGF GNFLEGVCNE 300 PMVPLRCGHG CCDPSEGHSQ SSLLGPEFVE YDEPPSFSSH ELISIATDLN KIAWIKSGLE 360 NNGTRITENA ASQRVSQGAT TTSQMGLSVH NSTNDQMRYE EGRNKLMGMM TEVLSTQVPR 420 QTFAMPTEVE GLS

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MTVPNDAVSK QADDRPAESE LVRGTEAELI ELGDVTELNE GGLSSGKVRG PWSPEEDAVL  60
SRLVSKFGAR NWSLIARGIP GRSGKSCRLR WCNQLDPCVK RKPFSEEEDH IIVSAHAIHG  120
NKWAAIARLL PGRTDNAIKN HWNSTLRRKC IDRGKFKPEP DMMEDASFDR TKASSEETLS  180
VGNISSFKTP EGREVLMDNR LDQLDERVQA KEGCGVAESN YHSTLLAGSR GHPTLLGESK  240
EQSSLCRPVA RVSAFSVYDP PSGLANTSTF SRIVPGHGPL VQTCKLDFGF GNFLEGVCNE  300
PMVPLRCGHG CCDPSEGHSQ SSLLGPEFVE YDEPPSFSSH ELISIATDLN KIAWIKSGLE  360
NNGTRITENA ASQRVSQGAT TTSQMGLSVH NSTNDQMRYE EGRNKLMGMM TEVLSTQVPR  420
QTFAMPTEVE GLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	1e-106	MYB family protein