PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g379180.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 497aa    MW: 53985.1 Da    PI: 7.8533
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g379180.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH308.6e-10133157226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       +++ C +++ t tCk+G+ CkF H+
  Pd.00g379180.m02 133 GEKDCAHYMLTRTCKFGELCKFDHP 157
                       7889********************8 PP
2zf-CCCH28.32.9e-09184210127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C++f +t  Ck+G rCkF+H++
  Pd.00g379180.m02 184 PGEPDCPYFIKTQRCKFGMRCKFNHPK 210
                       5789*********************96 PP
3zf-CCCH37.73.5e-12233257327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C f+++tG+Ck+G++CkF+H++
  Pd.00g379180.m02 233 EPPCAFYLKTGQCKFGATCKFHHPK 257
                       79*********************96 PP
4zf-CCCH38.42e-12307332126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ++++ C+f+++tG CkyG++C+++H+
  Pd.00g379180.m02 307 PGEPDCPFYLKTGSCKYGATCRYNHP 332
                       5789*********************9 PP
5zf-CCCH36.96.1e-12390412426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        +C+++++tG+C++G++Ck++H+
  Pd.00g379180.m02 390 IECDYYMKTGECRFGEQCKYHHP 412
                       68********************8 PP
6zf-CCCH40.35.4e-13443468227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       + ++C ++++tGtCkyG++CkF H+p
  Pd.00g379180.m02 443 GVAICVYYLKTGTCKYGATCKFDHPP 468
                       5789********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    
MSSHLYGYGA AQSAAAAAAA TAGLSSVYTS RALTDPTLRY LSGSDPFASA TDHHSRSSSM  60
YLATSHLMSQ SSWPAPDVEP GVPGVKRPSE ALYHQSFMGA YNTIGQEAWY SALAKRPRYE  120
SASNLPIYPQ RPGEKDCAHY MLTRTCKFGE LCKFDHPIWV PEGGIPDWKE VPLVAPSESL  180
PERPGEPDCP YFIKTQRCKF GMRCKFNHPK EKLAAAVASE NADVFALPER PSEPPCAFYL  240
KTGQCKFGAT CKFHHPKDIQ IPSAEQENKI GETGTIIQAE GTGFAVKLPV SFSPALLYNS  300
KELPVRPGEP DCPFYLKTGS CKYGATCRYN HPDRYAINPP IGAISHSIVA PPAAGLNIGV  360
INPAASIYQT LAQPTVGGGQ TVYPQRFGQI ECDYYMKTGE CRFGEQCKYH HPIDRSAVAL  420
STTKPVQQQN VKLTLAGLPR REGVAICVYY LKTGTCKYGA TCKFDHPPPG EVMGMAASQG  480
ASGGEAKADE FTQEQQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0C3H family protein