PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g364980.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 559aa MW: 60827.6 Da PI: 7.5939

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g364980.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.7e-09	373	420	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Pd.00g364980.m01 373 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 420 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence
MPAWRSSFST AMDIQATATA DRNCSSEQSP DRFYNPNWDK SADQNIHFES ALSSMVSSPA 60 ASNSNISNES FVIRELIGKL GNIGSSGEIS PHSQSLLGIQ ANTYMGRNGN GNASTNTSCY 120 STPLNSPPKL SLPIMDHHLK KEKLPNMGKP MPLNSSVAEF SADPGFAERA AKFSCFGSRS 180 FNGRTTQLGM NNNSSSNNNT ELPYRSNAIM GNGKLPRVSS SPALKALGSQ TGLQEKMNSL 240 LQDRNELPIS REESTLSEQN PNGETGLAAS NSMDLNSRKR KSVSKGKAKE PPPISSPSPI 300 ATKGAELNDN SNAKRSKPNE NNGNDQNGSV KAEEDTKGST SSDEKQTRTG PKPPEPPKDY 360 IHVRARRGQA TDSHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ 420 RQVEFLSMKL ASVNTRLDFN VDALMSKEIF QQNNSLPQHP IFPLDSSAQA IYGHQRQQNP 480 ALQNNISNGA VDPLDTSLCQ SLGMQLPPLS GFNSEGIPQF PAFGEDDLQT IVQMGYGQNP 540 NRETELDGSN QVSHMKIEL

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence

MPAWRSSFST AMDIQATATA DRNCSSEQSP DRFYNPNWDK SADQNIHFES ALSSMVSSPA  60
ASNSNISNES FVIRELIGKL GNIGSSGEIS PHSQSLLGIQ ANTYMGRNGN GNASTNTSCY  120
STPLNSPPKL SLPIMDHHLK KEKLPNMGKP MPLNSSVAEF SADPGFAERA AKFSCFGSRS  180
FNGRTTQLGM NNNSSSNNNT ELPYRSNAIM GNGKLPRVSS SPALKALGSQ TGLQEKMNSL  240
LQDRNELPIS REESTLSEQN PNGETGLAAS NSMDLNSRKR KSVSKGKAKE PPPISSPSPI  300
ATKGAELNDN SNAKRSKPNE NNGNDQNGSV KAEEDTKGST SSDEKQTRTG PKPPEPPKDY  360
IHVRARRGQA TDSHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ  420
RQVEFLSMKL ASVNTRLDFN VDALMSKEIF QQNNSLPQHP IFPLDSSAQA IYGHQRQQNP  480
ALQNNISNGA VDPLDTSLCQ SLGMQLPPLS GFNSEGIPQF PAFGEDDLQT IVQMGYGQNP  540
NRETELDGSN QVSHMKIEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	282	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-112	bHLH family protein