PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g350700.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 306aa MW: 35075.3 Da PI: 8.0892 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.5 | 1.7e-41 | 18 | 117 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq++l++l+a+ Pd.00g350700.m01 18 PCAACKILRRRCAEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQELPESHRADAVSSMVYEANARIRDPVYGCAGAICQLQKHLSELQAQ 110 7******************************************************************************************** PP DUF260 94 lallkee 100 la++++e Pd.00g350700.m01 111 LAKTQAE 117 ***9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence |
MATMSSKKLA FQSYMDSPCA ACKILRRRCA EKCVLAPYFP PTEPLKFTIA HRVFGASNII 60 KLLQELPESH RADAVSSMVY EANARIRDPV YGCAGAICQL QKHLSELQAQ LAKTQAELLN 120 MQSQQGNLIA LISRKLEKMS GAGKKVADVA FKASRKIDWE GMAKLLVSDE ARKEFASLRR 180 AFDEVNTTLQ TKFSQEPEPI DWEYYRKGIG SRLVDMYKEA YDSVQVPKYV DTVTPEYKPK 240 FDQLLVDLKE AEEKSLKESE RLEKEIAEVQ ELKKKISTMT ADEYFEKHPE LKKKFDDEIR 300 NDYWGY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-66 | LBD family protein |