PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g350390.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 814aa    MW: 88741.6 Da    PI: 6.2161
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g350390.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.47.8e-21124179156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k
  Pd.00g350390.m01 124 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 179
                       688999***********************************************999 PP
2START206.78.8e-653315551206
                       HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
             START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                       ela++a++elvk+a+ +ep+W +s     e +n +e++++f++  +     + +ea+r++g+v+ ++  lve+l++++ +W e+++    + +
  Pd.00g350390.m01 331 ELALAAMDELVKLAQTDEPLWLRSLeggrEVLNHEEYMRSFTPCIGlkpngFVTEASRETGMVIINSLALVETLMESN-RWLEMFPclvaRTS 422
                       5899************************99***********9999899999***************************.************** PP

                       EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
             START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                       t++vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvSvd  ++ +  + ++ +++lpSg+++++++ng+skvtw
  Pd.00g350390.m01 423 TTDVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDTIRDTSGAPTFMNCRRLPSGCVVQDMPNGYSKVTW 515
                       **************************************************************999**************************** PP

                       EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       veh++++++++h+l+r++++sg+ +ga++wvatlqrqce+
  Pd.00g350390.m01 516 VEHAEYDESQVHQLYRPMLSSGMGFGAQRWVATLQRQCEC 555
                       **************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    
MSFGGFLDNS TGSGGGARIV ADISYNNTSS STHSNNMPSS ALAQPRLVTQ SLTKSMFNSP  60
GLSLALQTNA DGQGDVTRMA ENFETNVGRR SREEEHESRS GSDNMDGGSG DDQDAADNTN  120
PRKKKRYHRH TPQQIQELEA LFKECPHPDE KQRLELSRRL CLETRQVKFW FQNRRTQMKT  180
QLERHENSLL RQENDKLRAE NMSIRDAMRN PICSNCGGPA IIGEISLEEQ HLRIENARLK  240
DELDRVCALA GKFLGRPISS LATSMGPPLP SSTLELGVGS NGFGGLSSVA TSMPVGPDFG  300
GGIGSAMSVV PHSRPSVTGL DRSMERSMFL ELALAAMDEL VKLAQTDEPL WLRSLEGGRE  360
VLNHEEYMRS FTPCIGLKPN GFVTEASRET GMVIINSLAL VETLMESNRW LEMFPCLVAR  420
TSTTDVISSG MGGTRNGALQ LMHAELQVLS PLVPVREVNF LRFCKQHAEG VWAVVDVSVD  480
TIRDTSGAPT FMNCRRLPSG CVVQDMPNGY SKVTWVEHAE YDESQVHQLY RPMLSSGMGF  540
GAQRWVATLQ RQCECLAILI GRRSMLKLAQ RMTDNFCAGV CASTVHKWNK LNARNVDEDV  600
RVMTRESLDD PGEPPGIVLS AATSVWLPVS PQRLFDFLRD ERLRSEWDIL SNGGPMQEMA  660
HIAKGQDPGN CVSLLRARAM NANQSSMLIL QETCIDAAGG LVVYAPVDIP AMHVVMNGGD  720
SAYVALLPSG FAIVPDESGS RGPMTVKGGG HGSSNGGGGE DATHRVSGSL LTMTFQILVN  780
SLPSAKLTVE SVETVNNLIS CTVQKIKAAL HCES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein