PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g349940.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 435aa MW: 49218.2 Da PI: 8.7931

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g349940.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47.7	1.9e-15	214	255	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ r+ tf kR++ i KKA ELS LC+++v++i++ ++ Pd.00g349940.m01 214 IPNEGTRKMTFRKRKKSIYKKADELSKLCGIDVCLIVYEADQ 255 778999*******************************98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MHYKSSTKST GDKGLEFCST IATIAAITGI TGLIGCIVGG SNLFPSFFVS APFVQVLVYL 60 EEVKQLYALE RDILLESLLV MLLGWLTCYY STKWTVRSTG LFDPLSSPPG EKSPCPIGSV 120 NPEKGKESHR KVPLPEEKSH RKKSLCPVGI SPSPSEAKKT KIGGKENNKC LPRQTRPGRG 180 DGGSPVGNRK QIVSLRKPRE EDMVAPRRRS LELIPNEGTR KMTFRKRKKS IYKKADELSK 240 LCGIDVCLIV YEADQKKGRA VQPETWPLDP TQFKRSLNKY KDSKDTSTPG LKRNFDMSDF 300 YEDKKDHVDE DDEKFQNLGK KIFEEEYPTK FQNLGKKISE EEYPTWDDRI DDFSQDELTE 360 LIASLESKIQ VATKKIDSME RYMGFAKKQN QSLVREEINH DEQPYQVPAL MSPPSLVHYP 420 MLPSAWVSSS ESEKS

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MHYKSSTKST GDKGLEFCST IATIAAITGI TGLIGCIVGG SNLFPSFFVS APFVQVLVYL  60
EEVKQLYALE RDILLESLLV MLLGWLTCYY STKWTVRSTG LFDPLSSPPG EKSPCPIGSV  120
NPEKGKESHR KVPLPEEKSH RKKSLCPVGI SPSPSEAKKT KIGGKENNKC LPRQTRPGRG  180
DGGSPVGNRK QIVSLRKPRE EDMVAPRRRS LELIPNEGTR KMTFRKRKKS IYKKADELSK  240
LCGIDVCLIV YEADQKKGRA VQPETWPLDP TQFKRSLNKY KDSKDTSTPG LKRNFDMSDF  300
YEDKKDHVDE DDEKFQNLGK KIFEEEYPTK FQNLGKKISE EEYPTWDDRI DDFSQDELTE  360
LIASLESKIQ VATKKIDSME RYMGFAKKQN QSLVREEINH DEQPYQVPAL MSPPSLVHYP  420
MLPSAWVSSS ESEKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	229	RRRSLELIPNEGTRKMTFRKRKK
2	225	229	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	5e-19	M-type_MADS family protein