PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g334930.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 154aa    MW: 16609.5 Da    PI: 4.585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g334930.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.0002618432654
                      TSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH 26 llPkaskapskKlsKaeiLekAveYIksL 54
                      l       +s  l+Ka+i   A +YIk+L
  Pd.00g334930.m01 18 LRAAT---NSNALNKASIIVDASNYIKEL 43
                      33333...6667***************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
MSSGDRKKAV LYHQLQQLRA ATNSNALNKA SIIVDASNYI KELKQKVDTL RQGVGTSTSP  60
NPSPAQVTVE TLERGFLINV LSDKNSPGLL VSILEAFEEL GLDVLDARVS CSDTFQLEAV  120
GGENQGQADS IDAHVVKQAV LQAIQNWSQS SEQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.16e-10bHLH family protein