PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g323390.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 286aa MW: 32696.2 Da PI: 4.905 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.6 | 8.3e-07 | 192 | 236 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR++i ++ +eL +l+P K++ ae+L+ A +++k+L+ Pd.00g323390.m01 192 SIAARERRRKITEKTQELGKLVPGG-----SKMNTAEMLTAAYNFVKYLR 236 67889******************95.....5*****************95 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 286 aa Download sequence |
MALSSFSSRE TVPPQSFGSE MTNCFQPNIE AELLAAEELL KYYQLDYNCS ILPNNLFFDD 60 HPCHDPYNLL NLENYHPDTT SDDHLLLPQL TTSDMFPQLD FYPYPYPKRQ KCFQDFVYPE 120 FTPATFYDAF APDSCPLPEL LPAPGVFATP LLTFNQHPEE TVTDSNKSKV NDYEIGFTAK 180 KKVEEKCVSA QSIAARERRR KITEKTQELG KLVPGGSKMN TAEMLTAAYN FVKYLRAQVG 240 ILEFMGSFQG FYANSLLLYT QELKGALLLL KSCEQLHFLL FKRSYI |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 180 | 201 | KKKVEEKCVSAQSIAARERRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30670.1 | 5e-19 | bHLH family protein |