PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g318240.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 808aa    MW: 87982 Da    PI: 6.4213
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g318240.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.81.2e-20117172156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       ++k +++t++q++eLe++F+++++p++++r eL+++l+L+++qVk+WFqNrR+++k
  Pd.00g318240.m01 117 KKKYHRHTPSQIQELENFFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMK 172
                       79999************************************************999 PP
2START173.71.2e-543275482206
                       HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
             START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                       la +a++elvk+a+a++p+W k s    e++n +e++     +     + +e  r++ +v+ ++  lve+l+d + +W e++     +a++++
  Pd.00g318240.m01 327 LAMAAMDELVKMAQADSPLWIKTSdggtEILNHEEYRAFSCIGTKpsnFVTEGTRDTCMVIINSLALVETLMDAN-RWAEMFSclvaRASVID 418
                       57799*******************99999999999987655544466679*************************.***************** PP

                       EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
             START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                       vis g      galq+m aelq+lsplvp R   f+R+++q+++g+w++vdvS++ +q+ +++  +  ++++pSg+++++++n+ skvtw+eh
  Pd.00g318240.m01 419 VISGGmggtrnGALQVMHAELQVLSPLVPaRPLKFLRFCKQHQEGVWAVVDVSIEINQEGSNTNAFLNCRRFPSGCIVQDMPNNCSKVTWIEH 511
                       ********************************************************************************************* PP

                       EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        +++++++h ++ +l++sg+ +ga++w+atlqrqce+
  Pd.00g318240.m01 512 SEYDENTVHHIFWQLLRSGMGFGAQRWLATLQRQCEC 548
                       ***********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    
MSFGGLISGG SGNSGGGGAR VVADIAPHTP YMPSGAIAQP HFLTSPVPNS MRSSSALSLS  60
VKNMDGHSEL GLIAENFDPG IIGRMRDDEY ESRSGSDNFE GASGDDQDAG DEQRPRKKKY  120
HRHTPSQIQE LENFFKECPH PDEKQRLELS RRLSLETKQV KFWFQNRRTQ MKTQLERHEN  180
IILRQENDKL RAENGVMKDA MANPVCNSCG GPAIPGQISF EEHQLRIENA RLKDELNRIC  240
TLANKFLGRP ISSLASPISL PNSTSGLELG IGRNGIGGLS AGGSGLPMGL NLGDGVSSSS  300
PMMPLIKSST GMLGNEVPYE RSMYIDLAMA AMDELVKMAQ ADSPLWIKTS DGGTEILNHE  360
EYRAFSCIGT KPSNFVTEGT RDTCMVIINS LALVETLMDA NRWAEMFSCL VARASVIDVI  420
SGGMGGTRNG ALQVMHAELQ VLSPLVPARP LKFLRFCKQH QEGVWAVVDV SIEINQEGSN  480
TNAFLNCRRF PSGCIVQDMP NNCSKVTWIE HSEYDENTVH HIFWQLLRSG MGFGAQRWLA  540
TLQRQCECLA FLISSTNSIE DHTGLGTNGK KSMLKLAQRM IDNFCAGVSA SSVRKWDKLC  600
VNNVSEDLRV MARKSVDDPG EPAGIVLSGS TSVWLPVSRH RLFDFLRDEQ LRDQWDVLSK  660
THKMQLMLRI AKSQGGGNCV SLLRANVVDA NENTMLMLQE SWSDASGSLV VYAPVDPASM  720
SAVMRGGDSA YVALLPSGFA ILPGGPPGYG MVKTEGNGCD DGGCFLTVGF QILGSNYPAA  780
KLDVQSINTV NTLVSHTIEK IKSALQVP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0HD-ZIP family protein