PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g307350.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 305aa    MW: 34168.7 Da    PI: 9.2339
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g307350.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.3e-164487146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      rg+++ +Ed  +++++++lG++ W++Ia++++ +Rt++++k++w++
  Pd.00g307350.m01 44 RGNFSLQEDRTIIQLHALLGNR-WSAIAAHLP-KRTDNEVKNYWHS 87
                      89********************.*********.***********86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MGSKRRGAKS LRSDAILKLI IGLQRCGKSC RLRWRNYLRP DIRRGNFSLQ EDRTIIQLHA  60
LLGNRWSAIA AHLPKRTDNE VKNYWHSRLK KLLALKGYDP VTHKPKTTIF GSANGSTDDR  120
KTGSNLNHIA QWESARLQAE ARFVRDSELH KQAQNLYDNN DISTASSILL GHNKDFGPTD  180
QLFGQNAPQC LDILRAWESI LMSNYSKATG GQDHVNSFGN GLAGDFEPPI ISAISRSNGS  240
SLMDCFFHEP VGQCFDENYG TSITEPFAAV HHNMGFKNGA CLEDFGLWEI IMQGRKYCPI  300
SGISM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.12e-58MYB family protein