PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g299960.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 709aa MW: 78217.8 Da PI: 6.7209 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.3 | 7.4e-20 | 24 | 79 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++ Le +F+++++p++++r +L+++lgL rq+k+WFqNrR+++k Pd.00g299960.m01 24 KKRYHRHTANQIQKLEGMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 79 678899***********************************************998 PP | |||||||
2 | START | 179.2 | 2.4e-56 | 223 | 447 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke...qWdetlakaet 81 +a a++el+++ + +ep+W ks+ + +n + + ++f+++++ ++ea+r+sgvv+m+ lve ++d ++ + + + a+t Pd.00g299960.m01 223 IAANAMEELLRLLQTNEPLWIKSAtdgrDVLNLESYERIFPRANShlknpnLRIEASRDSGVVIMNGLALVEMFMDPNKfgeLFPTIVSMAKT 315 67889*********************9999**********99999*********************************77777777777**** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 +evissg g lqlm+ elq+lspl+ R+f+f+Ry++q ++g+w+ivdvS d +++++ + R+++lpSg+li++++ng+skv wv Pd.00g299960.m01 316 IEVISSGmlgsqsGSLQLMYKELQVLSPLAQtREFYFLRYCQQIEQGQWAIVDVSYDFPRDNQ-FTNQCRSHRLPSGCLIQDMPNGYSKVSWV 407 **************************************************************9.7999************************* PP E-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ehv+ +++ p h l+r l++sgla+ga +w+a+lqr ce+ Pd.00g299960.m01 408 EHVEIEDKAPtHRLYRDLIHSGLAFGAERWLAALQRMCER 447 **************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence |
MEFGSGGGAG SGGDHDASDS QRRKKRYHRH TANQIQKLEG MFKECPHPDE KQRLQLSREL 60 GLAPRQIKFW FQNRRTQMKA QHERADNCAL RAENDKIRCE NIAIREALKN VICPACGVPP 120 LNEDSYFDEH KLRMENAQLK EELDRVSSIA AKCIGRPISQ LPPVQPIHVS SLELSMASFG 180 GHGVGGPSLD LDLLPGTTSS TMPSLPYHPT VLSDMDKSLM TDIAANAMEE LLRLLQTNEP 240 LWIKSATDGR DVLNLESYER IFPRANSHLK NPNLRIEASR DSGVVIMNGL ALVEMFMDPN 300 KFGELFPTIV SMAKTIEVIS SGMLGSQSGS LQLMYKELQV LSPLAQTREF YFLRYCQQIE 360 QGQWAIVDVS YDFPRDNQFT NQCRSHRLPS GCLIQDMPNG YSKVSWVEHV EIEDKAPTHR 420 LYRDLIHSGL AFGAERWLAA LQRMCERFAC LMVSGTSTRD LEGVIPSPEG KRSMMKLAQR 480 MVNNFCASIS TSNGHRWTTL SGMNEVGVRV TIHKSTDPGQ PNGVVLSAAT TIWLPVSPQN 540 VFNFFKDERT RPQWDVLSNN NAVQEVAHIA NGSHPGNCIS VLRAFNTSQN NMLMLQESCI 600 DSSGSLVVYS PVDLPSINIA MSGEDPSYIP LLPSGFTISP DGRPEQGDGA STSSCNVHGS 660 GGSLVTVAFQ ILVSSLPSAK LNLESVNTVN TLIGTTVQQI KAALNCNSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | HD-ZIP family protein |